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Releases: common-workflow-language/cwltool

3.1.20241217163858

17 Dec 16:55
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What's Changed

  • make-template: fix type error by @mr-c in #2078
  • --no-warnings includes schema-salad; --validate should complain to stdout by @mr-c in #2084
  • Append "_latest" to image id if no tag is present by @sameeul in #2085
  • Fix cwltool:Loop extension definition by @GlassOfWhiskey in #2081
  • argparse: colorize the --help output with rich-argparse by @mr-c in #2080
  • Refactored ProvenanceProfile definition by @fmigneault in #2082
  • singularity: improve testing on version 4.x+ by @mr-c in #2088

Deps

Full Changelog: 3.1.20241112140730...3.1.20241217163858

3.1.20241112140730

12 Nov 15:37
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What's Changed

  • use max_cores in taskQueue instead of system cores by @kmavrommatis in #2038

  • Use "run" with singularity/apptainer instead of "exec", when possible by @sameeul in #2065

  • add note on docker macOS platform issue by @Brilator in #2064

  • cpu_count can be None, so fallback to 1 by @mr-c in #2063

  • conformance testing: no longer skip tests for singularity/apptainer by @mr-c in #2067

  • cibuildwheel: adjust pytest parallel execution ; drop musllinux_1_1 by @mr-c in #2061

Deps

  • Update ruamel-yaml requirement from <0.18,>=0.16.0 to >=0.16.0,<0.19 by @dependabot in #2066
  • Update flake8-bugbear requirement from <24.9 to <24.11 by @dependabot in #2062

New Contributors

Full Changelog: 3.1.20241024121129...3.1.20241112140730

3.1.20241024121129

24 Oct 13:22
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From this release onwards, cwltool requires Python 3.9+

What's Changed

Deps

Full Changelog: 3.1.20241007082533...3.1.20241024121129

3.1.20241007082533

07 Oct 15:51
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What's Changed

Deps

  • remove usage of ancient shellescape backport of Stdlib's shlex by @a-detiste in #2041
  • setuptools is not a install requirement by @mr-c in #2048
  • Bump sphinx-rtd-theme from 2.0.0 to 3.0.0 by @dependabot in #2049

New Contributors

Full Changelog: 3.1.20240909164951...3.1.20241007082533

3.1.20240909164951

09 Sep 17:40
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Full Changelog: 3.1.20240708091337...3.1.20240909164951

3.1.20240708091337

08 Jul 09:50
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What's Changed

  • Support Podman version 5.x which autodeletes the cidfiles by @mr-c in #2016
  • Use uv compatible syntax in test-requirements.txt by @hauntsaninja in #2012
  • Add docstrings to functions in ro.py by @AGoetzee in #2002

Deps

  • Update black requirement from ~=24.3 to ~=24.4 by @dependabot in #1992
  • Bump docker/build-push-action from 5 to 6 by @dependabot in #2008
  • Update galaxy-util requirement from <24.1 to <24.2 by @dependabot in #2015
  • Bump mypy from 1.10.0 to 1.10.1 by @dependabot in #2009
  • Update galaxy-tool-util requirement from !=23.0.1,!=23.0.2,!=23.0.3,!=23.0.4,!=23.0.5,<24.1,>=22.1.2 to !=23.0.1,!=23.0.2,!=23.0.3,!=23.0.4,!=23.0.5,>=24.1.1,<24.2 by @dependabot in #2014

New Contributors

Full Changelog: 3.1.20240508115724...3.1.20240708091337

3.1.20240508115724

16 May 12:43
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Full Changelog: 3.1.20240404144621...3.1.20240508115724

3.1.20240404144621

10 Apr 13:24
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What's Changed

  • add the --shm-size parameter at runtime by @lihl2014 in #1972
  • Append "cwltool" to HTTP User-Agent string by @svonworl in #1977
  • biocontainers test is flaky, automatically retry it. by @mr-c in #1983
  • setuptools: silence package discovery warnings by @mr-c in #1981
  • pytest: use the worksteal scheduler and run on all logical cores, not just physical. by @mr-c in https://github.com/common-
    workflow-language/cwltool/pull/1984
  • podman nor singularity/apptainer support is experimental by @mr-c in #1991

Deps

New Contributors

Full Changelog: 3.1.20240112164112...3.1.20240404144621

3.1.20240112164112

15 Jan 14:35
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New Contributors

Full Changelog: 3.1.20231207110929...3.1.20240112164112

3.1.20231207110929

07 Dec 11:17
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What's Changed

  • setup.py was missing spython install dependency by @mr-c in #1953
  • conformance tests: do so with the mypc compiled version of cwltool by @mr-c in #1951

Full Changelog: 3.1.20231206180100...3.1.20231207110929