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23 Open 43 Closed
23 Open 43 Closed
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Issues list

How to pass the protein pdb file to the released model weight: (mc_gearnet_edge.pth)
#69 opened Aug 22, 2024 by Tizzzzy
1
How to check the representation of a 3D structure data
#68 opened Aug 22, 2024 by Tizzzzy
Working with batches of proteins with different sizes
#66 opened Jul 9, 2024 by mpedraza98
Why is the Batch Size for Downstream Tasks Set to 2? It Seems Quite Slow
#65 opened Jul 8, 2024 by minjiecheng
About data_setting from species_start: 0 to species_end: 22 of alphafolddb_v2
#64 opened Jun 29, 2024 by minjiecheng
how Fmax and AUPRC are calculated?
#63 opened May 7, 2024 by Qzhangyx
Problems in using "fold_mc_gearnet_edge_ieconv.pth"
#62 opened May 4, 2024 by haniulu
Problems in using FC dataset
#61 opened Mar 30, 2024 by Yangqy-16
2
Seeking help for dataset
#60 opened Mar 14, 2024 by zsc2003
4
RuntimeError: shape '[31, 147]' is invalid for input of size 651 in extracting embbeding from pdb files
#59 opened Dec 17, 2023 by blazexpire
6
Extract the structure embeddings
#58 opened Dec 12, 2023 by Jerry888Chen
1
What is input (Tensor) – input node representations for GearNet
#57 opened Dec 7, 2023 by Heisenburger2020
1
Custom dataset. Data preprocessing
#52 opened Oct 9, 2023 by Chicky-Picky
1
Node classification tasks
#51 opened Sep 27, 2023 by mpedraza98
3
Pre-trained weight for ESM-GearNet
#49 opened Sep 8, 2023 by hxu105
4
Solution when alpha carbon coordinate is missing
#46 opened Aug 9, 2023 by YanjingLiLi
1
A dataset not found when I run "python script/pretrain.py -c config/pretrain/mc_gearnet_edge.yaml --gpus [0]"
#45 opened Aug 1, 2023 by horacehht
5
confusion on epochs
#44 opened Aug 1, 2023 by Siirui
3
atom view
#42 opened Jul 26, 2023 by karel-w
1
The pre-trained GearNet-Edge model for Fold Classification
#41 opened Jul 25, 2023 by arantir123
5
Explainability
#27 opened May 11, 2023 by MichailChatzianastasis
1
error in mc_esm_gearnet
#20 opened Apr 1, 2023 by hxu105
3
ERROR:torch.distributed.elastic.multiprocessing.api:failed (exitcode: -6) local_rank: 0 (pid: 20) of binary....
#13 opened Dec 12, 2022 by bozhenhhu
1
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