Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Data links in
alphafolddb.py
are outdated.From https://ftp.ebi.ac.uk/pub/databases/alphafold/, latest AlphaFold is v3. Some data, e.g.,
UP000006548_3702_ARATH_v2.tar
does not exist in v3.Just change the
xxx/latest/xxx
toxxx/v2/xxx
in the links.Moreover, the md5sum values are not right. I just double-checked and modified the md5sum of
UP000006548_3702_ARATH_v2.tar
. Other md5sum values might also need to be updated.