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Advanced Topics

seanfinan edited this page May 8, 2019 · 11 revisions

Advanced Topics

Overview of evaluating system results

You can use DeepPhe-Viz to see the results of the system.

If you make changes to the system configuration, if you customize the system code, or if you change the formatting of the files you input to the system, you could use a text file comparison (diff) tool to see how your changes affect the system output.

Development data

The pipeline was developed using separate training and development sets from 8 corpora. The corpora included notes from 4 sites and 3 cancer types. There was also variation in note types and counts per patient in the corpora. Results of system evaluations are pending publication. Note TypesPatient Representation

More documentation

  1. Visit the DeepPhe-Viz project.
  2. Visit the Pages section of the sidebar on this page to see all the base DeepPhe system documentation.

Open the Pages section (above) to view all pages by title.

Mission

Installation
   Windows
   Mac
   Linux
   Known Issues

Quickstart
   Windows Quickstart Tutorial
   Mac Quickstart Tutorial

Using DeepPhe-XN With Your Own Files
   Input File Requirements
   Configuring DeepPhe Phenotype Summarizer

Example Files Description
   Using DeepPhe-XN Visualizer
   Additional Output File Types
   Example File Data Specifics

About the DeepPhe Pipeline
   Pipeline Description

Code Modules

Licensing
Funding
Contact / Help

Wiki Conventions

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