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Improve modelbuilder notebook #515

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21 of 56 tasks
veenstrajelmer opened this issue Sep 15, 2023 · 0 comments
Open
21 of 56 tasks

Improve modelbuilder notebook #515

veenstrajelmer opened this issue Sep 15, 2023 · 0 comments

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@veenstrajelmer
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veenstrajelmer commented Sep 15, 2023

Notebook was improved in #463

Further improvements:

Add sources for e.g. tide models, CMEMS and ERA5:

Add obspoints (or along coastline with #575):

obsfile = os.path.join(dir_output, f"{model_name}_obs.xyn")
obs_x = [-68.2240067, -68.2283020, -68.3852158, -68.1552582]
obs_y = [12.5409269, 12.2554617, 12.0076866, 12.0341187]
obs_n = ['Bonaire01', 'Bonaire02', 'Bonaire03', 'Bonaire04']
xynpoints = [hcdfm.XYNPoint(x=x,y=y,n=n) for x,y,n in zip(obs_x, obs_y, obs_n)]
xynmodel = hcdfm.XYNModel(points=xynpoints)
xynmodel.save(obsfile)

Running the model:

Interactive jupyter slurm:

#!/bin/bash
#SBATCH -t 1:00:00
#SBATCH -N 1

# Make sure the jupyter command is available, either by loading the appropriate modules, sourcing your own virtual environment, etc.
module load 2021
source /home/muiss/miniconda3/etc/profile.d/conda.sh
conda activate /home/muiss/miniconda3/envs/era5-e

# Choose random port and print instructions to connect
PORT=`shuf -i 5000-5999 -n 1`
LOGIN_HOST=${SLURM_SUBMIT_HOST}-pub.snellius.surf.nl
BATCH_HOST=$(hostname)

echo "To connect to the notebook type the following command from your local terminal:"
echo "ssh -J ${USER}@${LOGIN_HOST} ${USER}@${BATCH_HOST} -L ${PORT}:localhost:${PORT}"
echo
echo "After connection is established in your local browser go to the address:"
echo "http://localhost:${PORT}"

jupyter lab --no-browser --port ${PORT}
@veenstrajelmer veenstrajelmer changed the title Improve and run modelbuilder notebook Improve modelbuilder notebook Sep 18, 2023
This was referenced Oct 18, 2023
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