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v2.0.0 #148

Merged
merged 33 commits into from
Oct 26, 2021
Merged

v2.0.0 #148

merged 33 commits into from
Oct 26, 2021

Commits on Jul 2, 2021

  1. add description/troubleshooting for aws backend (about limit for numb… 

    …er of vcpus)
    @leepc12
    leepc12 committed Jul 2, 2021
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Commits on Aug 6, 2021

  1. Merge pull request #137 from ENCODE-DCC/hotfix_update_doc_aws_increas… 

    …e_limits

add description/troubleshooting for aws backend
    @leepc12
    leepc12 authored Aug 6, 2021
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  2. bump ver

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    leepc12 committed Aug 6, 2021
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  3. upgrade cromwell 59->65

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    leepc12 committed Aug 6, 2021
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  4. use modified cromwell for aws backend only (to fix localization error… 

    … 104)
    @leepc12
    leepc12 committed Aug 6, 2021
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  5. use modified cromwell in the init script

    @leepc12
    leepc12 committed Aug 6, 2021
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  6. upgrade circleci ubuntu image 1604->2004

    @leepc12
    leepc12 committed Aug 6, 2021
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  7. doc: java requirement 8 -> 11

    @leepc12
    leepc12 committed Aug 6, 2021
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  8. ci: fix singularity installation

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    leepc12 committed Aug 6, 2021
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  9. ci: singularity key server

    @leepc12
    leepc12 committed Aug 6, 2021
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  10. revert ubuntu upgrade and install java11 on ubuntu16

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    leepc12 committed Aug 6, 2021
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  11. ci: install openjdk11

    @leepc12
    leepc12 committed Aug 6, 2021
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  12. ci: remove old java

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    leepc12 committed Aug 6, 2021
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  13. ci: java 11

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    leepc12 committed Aug 6, 2021
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  14. ci: set default java as 11

    @leepc12
    leepc12 committed Aug 6, 2021
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Commits on Aug 16, 2021

  1. Merge pull request #139 from ENCODE-DCC/modified_cromwell_for_aws_bac… 

    …kend

Modified cromwell for aws backend
    @leepc12
    leepc12 authored Aug 16, 2021
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Commits on Oct 6, 2021

  1. change key name for docker, singularity, conda (added) in WDL meta

    @leepc12
    leepc12 committed Oct 6, 2021
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Commits on Oct 21, 2021

  1. refactor for conda, singularity, HPCs(slurm,sge,pbs,lsf), added lsf s… 

    …upport
    @leepc12
    leepc12 committed Oct 21, 2021
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Commits on Oct 22, 2021

  1. fix singularity test

    @leepc12
    leepc12 committed Oct 22, 2021
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  2. fix lsf errore

    @leepc12
    leepc12 committed Oct 22, 2021
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  3. fix broken test (workflow opts error due to lsf)

    @leepc12
    leepc12 committed Oct 22, 2021
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  4. fix slurm path remap problem

    @leepc12
    leepc12 committed Oct 22, 2021
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  5. fix bash nullglob issue

    @leepc12
    leepc12 committed Oct 22, 2021
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  6. fix sed issue in slurm backend

    @leepc12
    leepc12 committed Oct 22, 2021
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  7. fix conda and singularity path remap (inside docker->outside)

    @leepc12
    leepc12 committed Oct 22, 2021
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  8. fix hpc errors (typo)

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    leepc12 committed Oct 22, 2021
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  9. update readme

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    leepc12 committed Oct 22, 2021
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  10. update readme

    @leepc12
    leepc12 committed Oct 22, 2021
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  11. update doc

    @leepc12
    leepc12 committed Oct 22, 2021
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  12. bump ver to 2.0.0

    @leepc12
    leepc12 committed Oct 22, 2021
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Commits on Oct 25, 2021

  1. Merge pull request #147 from ENCODE-DCC/PIP-1626_docker_and_conda_in_… 

    …task_runtime

Pip 1626 docker and conda in task runtime
    @leepc12
    leepc12 authored Oct 25, 2021
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  2. fix typo

    @leepc12
    leepc12 committed Oct 25, 2021
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  3. replace dra with default_runtime_attributes to make it clearer

    @leepc12
    leepc12 committed Oct 25, 2021
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