Update NUOPC cap and externals to match CAM

.gitignore

@@ -23,6 +23,8 @@ buildnmlc
 test/include/*.mod
 test/include/*.o
 test/unit/tmp
+test/system/*.log
+test/system/cime-tests.o*
 
 # Ignore editor temporaries and backups
 *.swp

Externals.cfg

@@ -1,5 +1,5 @@
 [ccs_config]
-tag = ccs_config_cesm0.0.78
+tag = ccs_config_cesm0.0.106
 protocol = git
 repo_url = https://github.com/ESMCI/ccs_config_cesm
 local_path = ccs_config
@@ -13,37 +13,37 @@ local_path = components/cice5
 required = True
 
 [cice6]
-tag = cesm_cice6_4_1_10
+tag = cesm_cice6_5_0_7
 protocol = git
 repo_url = https://github.com/ESCOMP/CESM_CICE
 local_path = components/cice
 externals = Externals.cfg
 required = True
 
 [cmeps]
-tag = cmeps0.14.39
+tag = cmeps0.14.60
 protocol = git
 repo_url = https://github.com/ESCOMP/CMEPS.git
 local_path = components/cmeps
 required = True
 
 [cdeps]
-tag = cdeps1.0.21
+tag = cdeps1.0.33
 protocol = git
 repo_url = https://github.com/ESCOMP/CDEPS.git
 local_path = components/cdeps
 externals =  Externals_CDEPS.cfg
 required = True
 
 [cpl7]
-tag = cpl77.0.6
+tag = cpl77.0.8
 protocol = git
 repo_url = https://github.com/ESCOMP/CESM_CPL7andDataComps
 local_path = components/cpl7
 required = True
 
 [share]
-tag = share1.0.17
+tag = share1.0.18
 protocol = git
 repo_url = https://github.com/ESCOMP/CESM_share
 local_path = share
@@ -64,46 +64,45 @@ local_path = libraries/parallelio
 required = True
 
 [cime]
-tag = cime6.0.175
+tag = cime6.0.236_httpsbranch01
 protocol = git
 repo_url = https://github.com/ESMCI/cime
 local_path = cime
 required = True
 
 [cism]
-tag = cismwrap_2_1_96
+tag = cismwrap_2_1_100
 protocol = git
 repo_url = https://github.com/ESCOMP/CISM-wrapper
 local_path = components/cism
 externals = Externals_CISM.cfg
 required = True
 
 [clm]
-tag = ctsm5.1.dev139
+tag = ctsm5.2.005
 protocol = git
 repo_url = https://github.com/ESCOMP/CTSM
 local_path = components/clm
 externals = Externals_CLM.cfg
 required = True
 
 [fms]
-# Older tag than CESM as there is a compilation error mismatch
-tag = fi_20211011
+tag = fi_230818
 protocol = git
 repo_url = https://github.com/ESCOMP/FMS_interface
 local_path = libraries/FMS
 externals = Externals_FMS.cfg
 required = True
 
 [mosart]
-tag = mosart1_0_48
+tag = mosart1_0_49
 protocol = git
 repo_url = https://github.com/ESCOMP/MOSART
 local_path = components/mosart
 required = True
 
 [rtm]
-tag = rtm1_0_78
+tag = rtm1_0_79
 protocol = git
 repo_url = https://github.com/ESCOMP/RTM
 local_path = components/rtm

Externals_CAM.cfg

@@ -17,7 +17,7 @@ required = True
 local_path = src/physics/ncar_ccpp
 protocol = git
 repo_url = https://github.com/ESCOMP/atmospheric_physics
-tag = atmos_phys0_02_003
+tag = atmos_phys0_02_006
 required = True
 
 [externals_description]

src/control/cam_comp.F90

@@ -66,7 +66,8 @@ module cam_comp
 
    subroutine cam_init(caseid, ctitle, model_doi_url,                         &
         initial_run_in, restart_run_in, branch_run_in,                        &
-        calendar, brnch_retain_casename, aqua_planet,                         &
+        post_assim_in, calendar,                                              &
+        brnch_retain_casename, aqua_planet,                                   &
         single_column, scmlat, scmlon,                                        &
         eccen, obliqr, lambm0, mvelpp,                                        &
         perpetual_run, perpetual_ymd,                                         &
@@ -105,6 +106,7 @@ subroutine cam_init(caseid, ctitle, model_doi_url,                         &
       logical,           intent(in) :: initial_run_in        ! is inital run?
       logical,           intent(in) :: restart_run_in        ! is restart run?
       logical,           intent(in) :: branch_run_in         ! is branch run?
+      logical,           intent(in) :: post_assim_in         ! true => resume mode
       character(len=cs), intent(in) :: calendar              ! Calendar type
       ! brnch_retain_casename is a flag to allow a branch to use the same
       ! caseid as the run being branched from.
@@ -155,6 +157,7 @@ subroutine cam_init(caseid, ctitle, model_doi_url,                         &
            initial_run_in=initial_run_in,                                     &
            restart_run_in=restart_run_in,                                     &
            branch_run_in=branch_run_in,                                       &
+           post_assim_in=post_assim_in,                                       &
            aqua_planet_in=aqua_planet,                                        &
            brnch_retain_casename_in=brnch_retain_casename)
 

src/control/cam_control_mod.F90

@@ -27,19 +27,21 @@ module cam_control_mod
    logical, protected :: initial_run  ! startup mode which only requires a minimal initial file
    logical, protected :: restart_run  ! continue a previous run; requires a restart file
    logical, protected :: branch_run   ! branch from a previous run; requires a restart file
+   logical, protected :: post_assim   ! We are resuming after a pause
 
    logical, protected :: adiabatic         ! true => no physics
    logical, protected :: ideal_phys        ! true => run Held-Suarez (1994) physics
    logical, protected :: kessler_phys      ! true => run Kessler physics
    logical, protected :: tj2016_phys       ! true => run tj2016 physics
+   logical, protected :: grayrad_phys      ! true => run gray radiation (frierson) physics
    logical, protected :: simple_phys       ! true => adiabatic or ideal_phys or kessler_phys
-   !         or tj2016
+                                           !         or tj2016 or grayrad
    logical, protected :: aqua_planet       ! Flag to run model in "aqua planet" mode
    logical, protected :: moist_physics     ! true => moist physics enabled, i.e.,
-   ! (.not. ideal_phys) .and. (.not. adiabatic)
+                                           ! (.not. ideal_phys) .and. (.not. adiabatic)
 
    logical, protected :: brnch_retain_casename ! true => branch run may use same caseid as
-   !         the run being branched from
+                                               !         the run being branched from
 
    real(r8), protected :: eccen       ! Earth's eccentricity factor (unitless) (typically 0 to 0.1)
    real(r8), protected :: obliqr      ! Earth's obliquity in radians
@@ -53,13 +55,15 @@ module cam_control_mod
 !==============================================================================
 
    subroutine cam_ctrl_init(caseid_in, ctitle_in, initial_run_in,             &
-        restart_run_in, branch_run_in, aqua_planet_in, brnch_retain_casename_in)
+        restart_run_in, branch_run_in, post_assim_in,                         &
+        aqua_planet_in,  brnch_retain_casename_in)
 
       character(len=cl), intent(in) :: caseid_in            ! case ID
       character(len=cl), intent(in) :: ctitle_in            ! case title
       logical,           intent(in) :: initial_run_in       ! true => inital run
       logical,           intent(in) :: restart_run_in       ! true => restart run
       logical,           intent(in) :: branch_run_in        ! true => branch run
+      logical,           intent(in) :: post_assim_in        ! true => resume mode
       logical,           intent(in) :: aqua_planet_in       ! Flag to run model in "aqua planet" mode
       logical,           intent(in) :: brnch_retain_casename_in ! Flag to allow a branch to use the same
       ! caseid as the run being branched from.
@@ -73,6 +77,7 @@ subroutine cam_ctrl_init(caseid_in, ctitle_in, initial_run_in,             &
       initial_run = initial_run_in
       restart_run = restart_run_in
       branch_run  = branch_run_in
+      post_assim  = post_assim_in
 
       aqua_planet = aqua_planet_in
 
@@ -87,6 +92,8 @@ subroutine cam_ctrl_init(caseid_in, ctitle_in, initial_run_in,             &
             write(iulog,*) '  Restart of an earlier run'
          else if (branch_run) then
             write(iulog,*) '  Branch of an earlier run'
+         else if (post_assim) then
+            write(iulog,*) '  DART run using CAM initial mode'
          else
             write(iulog,*) '         Initial run'
          end if
@@ -137,11 +144,12 @@ subroutine cam_ctrl_set_physics_type()
       suite_name = suite_names(1)
 
       adiabatic = trim(suite_name) == 'adiabatic'
-      ideal_phys = trim(suite_name) == 'held_suarez'
+      ideal_phys = trim(suite_name) == 'held_suarez_1994'
       kessler_phys = trim(suite_name) == 'kessler'
       tj2016_phys = trim(suite_name) == 'tj2016'
+      grayrad_phys = trim(suite_name) == 'grayrad'
 
-      simple_phys = adiabatic .or. ideal_phys .or. kessler_phys .or. tj2016_phys
+      simple_phys = adiabatic .or. ideal_phys .or. kessler_phys .or. tj2016_phys .or.  grayrad_phys
 
       moist_physics = .not. (adiabatic .or. ideal_phys)
 
@@ -159,6 +167,8 @@ subroutine cam_ctrl_set_physics_type()
             write(iulog,*) 'Run model with Kessler warm-rain physics forcing'
          else if (tj2016_phys) then
             write(iulog,*) 'Run model with Thatcher-Jablonowski (2016) physics forcing (moist Held-Suarez)'
+         else if (grayrad_phys) then
+            write(iulog,*) 'Run model with Frierson (2006) gray radiation physics'
          end if
       end if
 

src/control/cam_logfile.F90

@@ -59,7 +59,7 @@ subroutine cam_set_log_unit(unit_num)
 
       integer, intent(in) :: unit_num
 
-      ! Change iulog to unit_num on this PE or log a waring
+      ! Change iulog to unit_num on this PE or log a warning
       ! The log unit number can be set at most once per run
       if (iulog_set) then
          write(iulog, *) 'cam_set_log_unit: Cannot change log unit during run'