Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix end position for SV insertion types #1776

Draft
wants to merge 1 commit into
base: main
Choose a base branch
from

Fix end position for SV insertion types

f1ba5b7
Select commit
Loading
Failed to load commit list.
Draft

Fix end position for SV insertion types #1776

Fix end position for SV insertion types
f1ba5b7
Select commit
Loading
Failed to load commit list.
Travis CI / Travis CI - Pull Request succeeded Oct 22, 2024 in 48m 4s

Build Passed

The build passed. This is a change from the previous build, which failed.

Details

This is a pull request build.

It is running a build against the merge commit, after merging #1776 Fix end position for SV insertion types.
Any changes that have been made to the main branch before the build ran are also included.

Jobs and Stages

This build has six jobs, running in two sequential stages.

Stage 1: test

This stage passed.

Job Perl ENV OS State
3892.1 5.10 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3892.2 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3892.3 5.18 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3892.4 5.22 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed
3892.5 5.26 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed

Stage 2: trigger_dependent_builds

This stage passed.

Job Perl ENV OS State
3892.6 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux passed

Build Configuration

Build Option Setting
Language Perl
Operating System Linux (Trusty)
Perl Versions 5.10, 5.14, 5.18, 5.22, 5.26
Build Configuration
{
  "language": "perl",
  "os": [
    "linux"
  ],
  "dist": "trusty",
  "perl": [
    "5.10",
    "5.14",
    "5.18",
    "5.22",
    "5.26"
  ],
  "env": [
    "jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"} global=[One of the secure variables in your .travis.yml has an invalid format.]"
  ],
  "group": "deprecated",
  "addons": {
    "apt": {
      "packages": [
        "unzip",
        "mysql-server-5.6",
        "apache2",
        "libmysqlclient-dev",
        "libpng12-dev",
        "libssl-dev",
        "openssl",
        "mysql-client-5.6",
        "mysql-client-core-5.6"
      ]
    }
  },
  "before_install": [
    "export ENSEMBL_BRANCH=main",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-test.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-io.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-funcgen.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-variation.git",
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "mkdir -p $DEPS",
    "cd $DEPS",
    "$CWD/travisci/get_dependencies.sh",
    "cd $CWD"
  ],
  "install": [
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "export KENT_SRC=\"$DEPS/kent-335_base/src\"",
    "export HTSLIB_DIR=\"$DEPS/htslib\"",
    "export MACHTYPE=$(uname -m)",
    "export CFLAGS=\"-fPIC\"",
    "export PERL5LIB=$DEPS/bioperl-live:$PERL5LIB",
    "cd $DEPS",
    "$CWD/travisci/build_c.sh",
    "cd $CWD",
    "$CWD/travisci/install_dependencies.sh",
    "cp travisci/MultiTestDB.conf.travisci  t/MultiTestDB.conf"
  ],
  "script": [
    "./travisci/harness.sh"
  ],
  "jobs": {
    "include": [
      {
        "stage": "trigger_dependent_builds",
        "script": [
          "./travisci/trigger-dependent-build.sh"
        ],
        "perl": "5.14"
      }
    ]
  },
  "notifications": {
    "email": [
      {
        "on_success": "always",
        "on_failure": "always"
      }
    ]
  }
}