Reorient strands on read vs ref plots (#2077)

GMOD · Jun 25, 2021 · 72d10c0 · 72d10c0
1 parent f460d3d
commit 72d10c0
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/plugins/dotplot-view/src/index.ts b/plugins/dotplot-view/src/index.ts
@@ -214,7 +214,7 @@ export default class DotplotPlugin extends Plugin {
                       clipPos: saClipPos,
                       CIGAR: saCigar,
                       assemblyName: trackAssembly,
-                      strand: saStrandNormalized,
+                      strand: 1, // saStrandNormalized,
                       uniqueId: `${feature.id()}_SA${index}`,
                       mate: {
                         start: saClipPos,
@@ -225,6 +225,7 @@ export default class DotplotPlugin extends Plugin {
                   })
 
                 const feat = feature.toJSON()
+                feat.strand = 1
                 feat.mate = {
                   refName: readName,
                   start: clipPos,

diff --git a/plugins/linear-comparative-view/src/index.tsx b/plugins/linear-comparative-view/src/index.tsx
@@ -254,7 +254,7 @@ function WindowSizeDlg(props: {
             clipPos: saClipPos,
             CIGAR: saCigar,
             assemblyName: trackAssembly,
-            strand: saStrandNormalized,
+            strand: 1, // saStrandNormalized,
             uniqueId: `${feature.id()}_SA${index}`,
             mate: {
               start: saClipPos,
@@ -266,6 +266,7 @@ function WindowSizeDlg(props: {
 
       const feat = feature.toJSON()
       feat.clipPos = clipPos
+      feat.strand = 1
 
       feat.mate = {
         refName: readName,