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HiSeqX PGx Cohort
Mitch Bekritsky edited this page Oct 17, 2018
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70 samples from the CDC's GeT-RM program. These samples have been characterized for mutations of clinical importance confirmed by multiple laboratories with different testing platforms.1 Samples in this set were originally collected as part of the HapMap and 1000 Genomes Projects.
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ENA
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SRA
BaseSpace (pending)
| Sample ID | Family ID | Sex | Population | Superpopulation | Repository | Links | References |
|---|---|---|---|---|---|---|---|
| NA18484 | Y001 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19109 | Y006 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18868 | Y007 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18509 | Y010 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18518 | Y014 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18519 | Y014 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18855 | Y023 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18861 | Y024 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19178 | Y038 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19095 | Y041 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19176 | Y044 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19207 | Y051 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19226 | Y057 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19122 | Y061 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19143 | Y074 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19147 | Y075 | F | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19174 | Y100 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19213 | Y110 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19239 | Y117 | M | YRI | AFR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19819 | 2418 | F | ASW | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19908 | 2427 | M | ASW | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19917 | 2431 | F | ASW | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19920 | 2433 | M | ASW | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA20296 | 2475 | F | ASW | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19789 | M037 | M | MXL | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| HG01190 | PR40 | M | PUR | AMR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18524 | NA | M | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18526 | NA | F | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18540 | NA | F | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18544 | NA | M | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18552 | NA | F | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18564 | NA | F | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18565 | NA | F | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18617 | NA | F | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| HG00436 | SH012 | M | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| HG00589 | SH056 | M | CHS | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18942 | NA | F | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18952 | NA | M | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18959 | NA | M | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18966 | NA | M | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18973 | NA | F | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18980 | NA | F | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA18992 | NA | F | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19003 | NA | F | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA19007 | NA | M | JPT | EAS | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA10847 | 1334 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12145 | 1334 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07000 | 1340 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07019 | 1340 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07029 | 1340 | M | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07056 | 1340 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA06991 | 1341 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07055 | 1341 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA10851 | 1344 | M | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07348 | 1345 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA07357 | 1345 | M | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA10854 | 1349 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA11839 | 1349 | M | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA11832 | 1350 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12717 | 1358 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA11993 | 1362 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA10831 | 1408 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12156 | 1408 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12003 | 1420 | M | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12006 | 1420 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12813 | 1454 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA12873 | 1459 | F | CEU | EUR | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
| HG00276 | NA | F | FIN | EUR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA20509 | NA | M | TSI | EUR | NHGRI | ENA HiSeq X,ENA 10x,Coriell | 1 |
| NA21781 | NA | M | NA | NA | NIGMS | ENA HiSeq X,ENA 10x,Coriell | 1 |
- Pratt, et al (2016) Characterization of 137 Genomic DNA Reference Materials for 28 Pharmacogenetic Genes: A GeT-RM Collaborative Project. J Mol Diagn. 18(1):109-23. doi:10.1016/j.jmoldx.2015.08.005