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Allow both -R/-r and -F #32

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Allow both -R/-r and -F #32

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@bpow bpow commented May 22, 2020

This addresses #31 by removing the code preventing -r/-R and -F from both being used in kin, and also removes the default of using the frq_file as the regions for bcf synced reader.

The prior behavior would still be available by specifying the same file as both -R and -F.

Bonus commit: fixes a typo in an error message.

bpow added 2 commits May 22, 2020 13:01
There doesn't seem to be any reason not to allow analysis from a
freq_file while also restricting to certain regions.

This also removes the auto-usage of the frq_file as the regions
in bcf_sr, which works around some unused SNPs as described in Illumina#29
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