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Allow both -R/-r and -F #32

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Allow both -R/-r and -F #32

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Commits on May 22, 2020

  1. fix type/redundancy (-r/-R was repeated in error message)

    @bpow
    bpow committed May 22, 2020
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  2. Allow both -R/-r and -F to be used 

    There doesn't seem to be any reason not to allow analysis from a
freq_file while also restricting to certain regions.

This also removes the auto-usage of the frq_file as the regions
in bcf_sr, which works around some unused SNPs as described in Illumina#29
    @bpow
    bpow committed May 22, 2020
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