Update CLAW-vagrant to fcrepo 4.7.0; Address #423. #425

ruebot · 2016-11-18T17:22:04Z

See: #423

whikloj · 2016-11-21T15:36:37Z

Update to 4.7.1??? 😃

ruebot · 2016-11-21T15:37:43Z

@whikloj are you done cutting it? 😄

acoburn · 2016-11-21T15:50:25Z

I didn't think there was a 4.7.1 release. Did I miss something?

acoburn · 2016-11-21T15:52:53Z

Or is this just anticipating the 4.7.1 release? (which will have some improved JSON-LD features)

whikloj · 2016-11-21T15:54:31Z

I think it was a typo, but I felt the need to draw attention to it.

ruebot · 2016-11-23T18:11:37Z

@Natkeeran to test

ruebot · 2016-11-23T18:12:14Z

@edf to test as well

Natkeeran · 2016-11-23T21:53:23Z

@ruebot

I have following vagrant

commit 661d3f2ba1442ea6a3051f30c5e497f28c29b65b
Author: nruest <ruestn@gmail.com>
Date:   Fri Nov 18 12:20:24 2016 -0500

Fetched the PR:

git fetch origin pull/425/head:issue-423

Went to: http://localhost:8080/fcrepo/. It is giving me a HTTP Status 404 - /fcrepo/ error.

solr, fits and bidgata are accessible.

I've attached the catalina.out file:
catalina.txt

ruebot · 2016-11-23T22:11:57Z

@Natkeeran were there any errors in the Vagrant build that you can share?

whikloj · 2016-11-23T22:12:11Z

install/scripts/fcrepo.sh

@@ -30,4 +30,6 @@ service tomcat7 restart

 sleep 10
 cp -v $HOME_DIR/islandora/install/configs/repository.json /var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/config/minimal-default/repository.json
+echo "CATALINA_OPTS=\"\${CATALINA_OPTS} -Dfcrepo.modeshape.configuration=CATALINA_OPTS="${CATALINA_OPTS} -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json"


@ruebot Doh! @Natkeeran's problem is because this config no longer exists. Modeshape config here needs to be like fcrepo-exts/fcrepo-vagrant@05fcddc

Jared, ever the finder of my facepalms 😃

edf · 2016-11-23T23:56:55Z

@ruebot FWIW I had the same experience as @Natkeeran

ruebot · 2016-11-24T02:26:47Z

@edf was this with the most recent commit; 317447a?

edf · 2016-11-24T02:36:25Z

no, I'll grab the most recent commit and retest

ruebot · 2016-11-24T02:37:06Z

Awesome. Thanks @edf!

Natkeeran · 2016-11-24T16:12:56Z

@ruebot

Same issue with

commit 317447aac0b4ebe6cdf3927b50b800bad20b473b
Author: nruest <ruestn@gmail.com>
Date:   Wed Nov 23 18:23:43 2016 -0500

I don't see any obvious issues from the vagrant output.

==> default: Installing Fedora.
==> default: Downloading Fedora 4 version 4.7.0
==> default: '/home/vagrant/islandora/install/downloads/fcrepo-4.7.0.war' -> '/var/lib/tomcat7/webapps/fcrepo.war'
==> default: '/home/vagrant/islandora/install/configs/repository.json' -> '/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/config/file-simple/repository.json'
==> default: Running provisioner: shell...
    default: Running: /tmp/vagrant-shell20161124-19896-72q4lb.sh

I forgot to the pipe it to a file. Have the partial output as attachment.
vagrantout.txt

ruebot · 2016-11-24T19:31:53Z

Ok, lots of updates with the most recent commit. I have permission from @dannylamb and @whikloj to go classic ruebot and scope creep this PR. This should also address #417, and make sure islandora is actually installed and enabled which I do not believe was done correctly in #427. This also makes sure Blazegraph is actually up.

So!

Blazegraph should be up at http://localhost:8080/bigdata

Fedora should be up at http://localhost:8080/fcrepo and be version 4.7.0

"Update Properties" should contain

PREFIX schema: <http://schema.org/>
PREFIX premis: <http://www.loc.gov/premis/rdf/v1#>
PREFIX bf: <http://id.loc.gov/ontologies/bibframe/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX nt: <http://www.jcp.org/jcr/nt/1.0>
PREFIX pcdm: <http://pcdm.org/models#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX acl: <http://www.w3.org/ns/auth/acl#>
PREFIX pcdmfmt: <http://pcdm.org/file-format-types#>
PREFIX xsi: <http://www.w3.org/2001/XMLSchema-instance>
PREFIX geo: <http://www.w3.org/2003/01/geo/wgs84_pos#>
PREFIX mode: <http://www.modeshape.org/1.0>
PREFIX xmlns: <http://www.w3.org/2000/xmlns/>
PREFIX pcdmuse: <http://pcdm.org/use#>
PREFIX xml: <http://www.w3.org/XML/1998/namespace>
PREFIX pcdmwrks: <http://pcdm.org/works#>
PREFIX jcr: <http://www.jcp.org/jcr/1.0>
PREFIX rel: <http://id.loc.gov/vocabulary/relators/>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX fedoraconfig: <http://fedora.info/definitions/v4/config#>
PREFIX mix: <http://www.jcp.org/jcr/mix/1.0>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX islandorarelsint: <http://islandora.ca/ontology/relsint#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX cc: <http://creativecommons.org/ns#>
PREFIX image: <http://www.modeshape.org/images/1.0>
PREFIX ore: <http://www.openarchives.org/ore/terms/>
PREFIX sv: <http://www.jcp.org/jcr/sv/1.0>
PREFIX test: <info:fedora/test/>
PREFIX fedoramodel: <info:fedora/fedora-system:def/model#>
PREFIX gn: <http://www.geonames.org/ontology#>
PREFIX pcdmrts: <http://pcdm.org/rights#>
PREFIX islandorarelsext: <http://islandora.ca/ontology/relsext#>
PREFIX dwc: <http://rs.tdwg.org/dwc/terms/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fedora: <http://fedora.info/definitions/v4/repository#>
PREFIX nfo: <http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#>
PREFIX ebucore: <http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#>
PREFIX ldp: <http://www.w3.org/ns/ldp#>
PREFIX iana: <http://www.iana.org/assignments/relation/>
PREFIX xs: <http://www.w3.org/2001/XMLSchema>
PREFIX exif: <http://www.w3.org/2003/12/exif/ns#>
PREFIX dc: <http://purl.org/dc/elements/1.1/>


DELETE { }
INSERT { }
WHERE { }

islandora should be installed and enabled

$ ls /var/www/html/drupal/modules/islandora

@Natkeeran @edf @dannylamb @whikloj can you test again at your convenience?

ruebot · 2016-11-25T13:32:43Z

install/scripts/blazegraph.sh

 if [ $(grep -c 'com.bigdata.rdf.sail.webapp' /etc/default/tomcat7) -eq 0 ]; then
 	echo "JAVA_OPTS=\"\$JAVA_OPTS -Dcom.bigdata.rdf.sail.webapp.ConfigParams.propertyFile=/var/lib/tomcat7/webapps/bigdata/WEB-INF/RWStore.properties\"" >> /etc/default/tomcat7
 fi

 service tomcat7 restart
+sleep 15


Keep an eye on this depending on your machinery. It very could not be enough time to do the next steps.

dannylamb · 2016-11-25T14:20:41Z

vagrant up

Natkeeran · 2016-11-25T14:24:16Z

@ruebot

I have the following PR:

commit ba9408e326e125cccc697609ed11ea88ed329cdf
Author: nruest <ruestn@gmail.com>
Date:   Thu Nov 24 14:27:23 2016 -0500

    LOTS OF UPDATES

Unfortunately, I am still getting the 404 error for http://localhost:8080/fcrepo/.

http://localhost:8080/solr/ does not have a default collection as well!

blazegraph and fits look ok.

ruebot · 2016-11-25T14:25:59Z

@Natkeeran can you clear out fcrepo wars in your downloads directory and vagrant up again? Also, can you share you catalina.out, and any output from vagrant stdout when fcrepo.sh is running?

dannylamb · 2016-11-25T16:13:53Z

confirmed:

dannylamb

Works for me from a fresh install. But i'm on ubuntu 16.04 just like @ruebot.

Natkeeran · 2016-11-25T16:43:38Z

@ruebot you tip to remove the fcrepo from download helped. Fedroa seems to be up and running. The catalina looks clean as well. Other apps look good as well. Solr has its default collection.

(I have a separate issue. I can vagrant ssh, but can not sftp/ssh into it. I think this could be restricted to my environment/setting.)

PREFIX schema: <http://schema.org/>
PREFIX premis: <http://www.loc.gov/premis/rdf/v1#>
PREFIX bf: <http://id.loc.gov/ontologies/bibframe/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX nt: <http://www.jcp.org/jcr/nt/1.0>
PREFIX pcdm: <http://pcdm.org/models#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX acl: <http://www.w3.org/ns/auth/acl#>
PREFIX pcdmfmt: <http://pcdm.org/file-format-types#>
PREFIX xsi: <http://www.w3.org/2001/XMLSchema-instance>
PREFIX geo: <http://www.w3.org/2003/01/geo/wgs84_pos#>
PREFIX mode: <http://www.modeshape.org/1.0>
PREFIX xmlns: <http://www.w3.org/2000/xmlns/>
PREFIX pcdmuse: <http://pcdm.org/use#>
PREFIX xml: <http://www.w3.org/XML/1998/namespace>
PREFIX pcdmwrks: <http://pcdm.org/works#>
PREFIX jcr: <http://www.jcp.org/jcr/1.0>
PREFIX rel: <http://id.loc.gov/vocabulary/relators/>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX fedoraconfig: <http://fedora.info/definitions/v4/config#>
PREFIX mix: <http://www.jcp.org/jcr/mix/1.0>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX islandorarelsint: <http://islandora.ca/ontology/relsint#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX cc: <http://creativecommons.org/ns#>
PREFIX image: <http://www.modeshape.org/images/1.0>
PREFIX ore: <http://www.openarchives.org/ore/terms/>
PREFIX sv: <http://www.jcp.org/jcr/sv/1.0>
PREFIX test: <info:fedora/test/>
PREFIX fedoramodel: <info:fedora/fedora-system:def/model#>
PREFIX gn: <http://www.geonames.org/ontology#>
PREFIX pcdmrts: <http://pcdm.org/rights#>
PREFIX islandorarelsext: <http://islandora.ca/ontology/relsext#>
PREFIX dwc: <http://rs.tdwg.org/dwc/terms/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fedora: <http://fedora.info/definitions/v4/repository#>
PREFIX nfo: <http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#>
PREFIX ebucore: <http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#>
PREFIX ldp: <http://www.w3.org/ns/ldp#>
PREFIX iana: <http://www.iana.org/assignments/relation/>
PREFIX xs: <http://www.w3.org/2001/XMLSchema>
PREFIX exif: <http://www.w3.org/2003/12/exif/ns#>
PREFIX dc: <http://purl.org/dc/elements/1.1/>


DELETE { }
INSERT { }
WHERE { }

ruebot · 2016-11-25T16:47:02Z

@Natkeeran thanks! Feel free to document your separate issue in another ticket if you'd like.

@dannylamb I think we're good to go?

ruebot · 2016-11-25T16:47:41Z

...then I suppose I'll merge this with #407 once this gets merged.

dannylamb · 2016-11-25T17:26:42Z

@Natkeeran is it a port issue for sftp? does it run on 22 as well? we map ours to port 2222 i believe, so that might be something.

edf · 2016-11-25T17:50:31Z

The vagrant up I started at 1152 Eastern now has functioning fits, fedora, solr, blazegraph, tomcat admin, and Islandora. vagrant ssh works but ssh -p 2222 vagrant@localhost does not however creating a new user on the virtual machine did work (i.e. ssh -p 2222 newuser@localhost). My host for this test for a fully updated Ubuntu 14.04 Desktop

ruebot · 2016-11-25T17:52:57Z

@edf ah, right. we need to update the README file for ssh. I'll create an issue.

ruebot · 2016-11-25T17:56:28Z

Here is the issue: #437

I think @jyobb had similar problems.

jyobb · 2016-11-25T20:41:08Z

I was able to get in using the key after I converted it to putty format password did not work John

…

On Fri, Nov 25, 2016 at 11:56 AM, Nick Ruest ***@***.***> wrote: Here is the issue: #437 <#437> I think @jyobb <https://github.com/jyobb> had similar problems. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#425 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ACqS9oLtNQ6ERUA3Xy1ZRmt1wYn2qs_6ks5rByFNgaJpZM4K2uMI> .

Update CLAW-vagrant to fcrepo 4.7.1; Adress #423.

661d3f2

ruebot mentioned this pull request Nov 18, 2016

Update vagrant to use fcrepo 4.7.0 #423

Closed

ruebot added the Vagrant label Nov 22, 2016

ruebot changed the title ~~Update CLAW-vagrant to fcrepo 4.7.1; Adress #423.~~ Update CLAW-vagrant to fcrepo 4.7.0; Adress #423. Nov 23, 2016

ruebot assigned Natkeeran Nov 23, 2016

ruebot assigned edf Nov 23, 2016

whikloj requested changes Nov 23, 2016

View reviewed changes

ruebot changed the title ~~Update CLAW-vagrant to fcrepo 4.7.0; Adress #423.~~ Update CLAW-vagrant to fcrepo 4.7.0; Address #423. Nov 23, 2016

code review

317447a

ruebot added 2 commits November 24, 2016 13:31

Merge branch 'master' of github.com:Islandora-CLAW/CLAW into issue-423

0ca833a

LOTS OF UPDATES

ba9408e

ruebot commented Nov 25, 2016

View reviewed changes

dannylamb approved these changes Nov 25, 2016

View reviewed changes

whikloj approved these changes Nov 25, 2016

View reviewed changes

dannylamb merged commit 66fc3c7 into Islandora:master Nov 25, 2016

ruebot mentioned this pull request Nov 25, 2016

Move to Solr 6.2.1; Address #379. #407

Merged

ruebot deleted the issue-423 branch November 25, 2016 17:52

mjordan mentioned this pull request Dec 8, 2022

export_csv tasks should not require knowing the node IDs in advance mjordan/islandora_workbench#427

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Update CLAW-vagrant to fcrepo 4.7.0; Address #423. #425

Update CLAW-vagrant to fcrepo 4.7.0; Address #423. #425

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Update CLAW-vagrant to fcrepo 4.7.0; Address #423. #425

Update CLAW-vagrant to fcrepo 4.7.0; Address #423. #425

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