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[PkgEval] JLDArchives may have a testing issue on Julia 0.4 (2014-11-06) #4

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IainNZ opened this issue Nov 6, 2014 · 2 comments
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[PkgEval] JLDArchives may have a testing issue on Julia 0.4 (2014-11-06) #4

IainNZ opened this issue Nov 6, 2014 · 2 comments

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@IainNZ
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IainNZ commented Nov 6, 2014

PackageEvaluator.jl is a script that runs nightly. It attempts to load all Julia packages and run their tests (if available) on both the stable version of Julia (0.3) and the nightly build of the unstable version (0.4). The results of this script are used to generate a package listing enhanced with testing results.

On Julia 0.4

  • On 2014-11-05 the testing status was Tests pass.
  • On 2014-11-06 the testing status changed to Tests fail, but package loads.

Tests pass. means that PackageEvaluator found the tests for your package, executed them, and they all passed.

Tests fail, but package loads. means that PackageEvaluator found the tests for your package, executed them, and they didn't pass. However, trying to load your package with using worked.

This issue was filed because your testing status became worse. No additional issues will be filed if your package remains in this state, and no issue will be filed if it improves. If you'd like to opt-out of these status-change messages, reply to this message saying you'd like to and @IainNZ will add an exception. If you'd like to discuss PackageEvaluator.jl please file an issue at the repository. For example, your package may be untestable on the test machine due to a dependency - an exception can be added.

Test log:

>>> 'Pkg.add("JLDArchives")' log

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/BinDeps.jl:103.
Use "[]" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/BinDeps.jl:104.
Use "[]" instead.

WARNING: deprecated syntax "(String=>String)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/BinDeps.jl:146.
Use "Dict{String,String}()" instead.

WARNING: deprecated syntax "(String=>String)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/BinDeps.jl:147.
Use "Dict{String,String}()" instead.

WARNING: deprecated syntax "(String=>String)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/BinDeps.jl:148.
Use "Dict{String,String}()" instead.

WARNING: deprecated syntax "(String=>String)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/BinDeps.jl:149.
Use "Dict{String,String}()" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:87.
Use "[]" instead.

WARNING: deprecated syntax "(Symbol=>Any)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:224.
Use "Dict{Symbol,Any}()" instead.

WARNING: deprecated syntax "{a=>b for (a,b) in c}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:256.
Use "Dict{Any,Any}([a=>b for (a,b) in c])" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:352.
Use "[]" instead.

WARNING: deprecated syntax "(Symbol=>Any)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:383.
Use "Dict{Symbol,Any}()" instead.

WARNING: deprecated syntax "{a=>b, ...}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:387.
Use "Dict{Any,Any}(a=>b, ...)" instead.

WARNING: deprecated syntax "(Any=>Any)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:494.
Use "Dict{Any,Any}()" instead.

WARNING: deprecated syntax "(Any=>Any)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:555.
Use "Dict{Any,Any}()" instead.

WARNING: deprecated syntax "(Any=>Any)[]" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:660.
Use "Dict{Any,Any}()" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:889.
Use "[]" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/dependencies.jl:959.
Use "[]" instead.

WARNING: deprecated syntax "{}" at /home/idunning/pkgtest/.julia/v0.4/BinDeps/src/debug.jl:51.
Use "[]" instead.

WARNING: deprecated syntax "[a=>b, ...]" at /home/idunning/pkgtest/.julia/v0.4/HDF5/deps/build.jl:23.
Use "Dict(a=>b, ...)" instead.
INFO: Installing BinDeps v0.3.6
INFO: Installing HDF5 v0.4.6
INFO: Installing JLDArchives v0.0.3
INFO: Installing SHA v0.0.3
INFO: Installing URIParser v0.0.3
INFO: Building HDF5
INFO: Package database updated

>>> 'using JLDArchives' log
Julia Version 0.4.0-dev+1425
Commit 0470ecb (2014-11-06 06:36 UTC)
Platform Info:
  System: Linux (x86_64-unknown-linux-gnu)
  CPU: Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Sandybridge)
  LAPACK: libopenblas
  LIBM: libopenlibm
  LLVM: libLLVM-3.3

>>> test log

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/JLDArchives/test/v0.2.jl:186.
Use "Any[a,b, ...]" instead.

WARNING: deprecated syntax "{a,b, ...}" at /home/idunning/pkgtest/.julia/v0.4/JLDArchives/test/v0.2.jl:188.
Use "Any[a,b, ...]" instead.
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 140233779705664:
  #000: H5Dio.c line 173 in H5Dread(): can't read data
    major: Dataset
    minor: Read failed
  #001: H5Dio.c line 420 in H5D__read(): unable to set up type info
    major: Dataset
    minor: Unable to initialize object
  #002: H5Dio.c line 952 in H5D__typeinfo_init(): unable to convert between src and dest datatype
    major: Dataset
    minor: Feature is unsupported
  #003: H5T.c line 4535 in H5T_path_find(): no appropriate function for conversion path
    major: Datatype
    minor: Unable to initialize object

WARNING: Error reading TF
ERROR: Error reading dataset /_refs/TF/1
 in error at error.jl:22
 in h5d_read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/plain.jl:1723
 in read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/plain.jl:1213
 in getrefs at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:474
 in read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:445
 in read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:286
 in getrefs at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:481
 in read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:445
 in read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:286
 in read at /home/idunning/pkgtest/.julia/v0.4/HDF5/src/JLD00.jl:241
 in anonymous at no file:86
 in include at ./boot.jl:242
 in include_from_node1 at ./loading.jl:128
 in include at ./boot.jl:242
 in include_from_node1 at loading.jl:128
 in process_options at ./client.jl:293
 in _start at ./client.jl:375
 in _start_3B_3772 at /home/idunning/julia04/usr/bin/../lib/julia/sys.so
while loading /home/idunning/pkgtest/.julia/v0.4/JLDArchives/test/v0.2.jl, in expression starting on line 125
while loading /home/idunning/pkgtest/.julia/v0.4/JLDArchives/test/runtests.jl, in expression starting on line 1
INFO: Testing JLDArchives
=============================[ ERROR: JLDArchives ]=============================

failed process: Process(`/home/idunning/julia04/usr/bin/julia /home/idunning/pkgtest/.julia/v0.4/JLDArchives/test/runtests.jl`, ProcessExited(1)) [1]

================================================================================
INFO: No packages to install, update or remove
ERROR: JLDArchives had test errors
 in error at error.jl:21
 in test at pkg/entry.jl:719
 in anonymous at pkg/dir.jl:28
 in cd at ./file.jl:20
 in cd at pkg/dir.jl:28
 in test at pkg.jl:68
 in process_options at ./client.jl:221
 in _start at ./client.jl:375
 in _start_3B_3772 at /home/idunning/julia04/usr/bin/../lib/julia/sys.so


>>> end of log
@timholy
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timholy commented Nov 15, 2014

Turned out to be a consequence of the Uint->UInt transition.

@timholy
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timholy commented Nov 15, 2014

Reference JuliaLang/julia#8907

DSLituiev pushed a commit to DSLituiev/JLD.jl that referenced this issue Oct 19, 2015
@timholy
Replace Uint->UInt in typenames (backwards compatibility for old files)
9ff6c46 
Fixes JuliaIO/JLDArchives.jl#4
See JuliaLang/julia#8907
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