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Releases: KohlbacherLab/epytope

epytope v3.4.0

11 Jan 21:52
@jonasscheid jonasscheid
v3.4.0
5a3a2c8
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epytope v3.4.0 Latest
Latest

Added

  • #93 Added NetMHCIIpan version 4.2 interface #92
  • #96 Added NetMHCIIpan version 4.3 interface #95

Changed

Fixed

  • #93 Fixed length restriction of NetMHCIIpan interfaces #91
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epytope v3.3.1

25 Apr 11:48
@jonasscheid jonasscheid
v3.3.1
28d70d4
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epytope v3.3.1

Added

Changed

Fixed

  • #83 Fixed erroneous mouse allele parsing for PSSM predictors #82

Contributors

e-dorigatti
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epytope v3.3.0

02 Dec 10:19
@christopher-mohr christopher-mohr
v3.3.0
4e36404
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epytope v3.3.0

epytope is the successor project of FRED2, which was renamed to a more versioning friendly base name.

Added

Changed

Fixed

See CHANGELOG for the complete list of changes.

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epytope v3.2.0

09 Nov 07:36
@christopher-mohr christopher-mohr
v3.2.0
56eaa93
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epytope v3.2.0

epytope is the successor project of FRED2, which was renamed to a more versioning friendly base name.

Added

  • #74 - Add function to Peptide class to determine if peptide originates from a variant

Changed

  • #63 - Outsource supported alleles of prediction tools #61
  • #69 - Improve Ensembl BioMart adapter #57

Fixed

  • #73 - Fix NetMHCII 4.0 parser #72

See CHANGELOG for the complete list of changes.

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epytope v3.1.0

15 Jun 12:10
@christopher-mohr christopher-mohr
v3.1.0
86586c9
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epytope v3.1.0

Second release of epytope. epytope is the successor project of FRED2, which was renamed to a more versioning friendly base name.

Added

  • #58 - Add check for BioMart transcript sequence availability #55
  • #59 - Add interface for NetMHCpan 4.1 #56
  • #66 - Add interface for NetMHCIIpan 4.1 #65

Changed

  • #62 - Update the supported alleles of syfpeithi #60

Fixed

  • #53 - Fix ANN predictor results #52

See CHANGELOG for the complete list of changes.

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epytope v3.0.0

31 Jan 10:48
@christopher-mohr christopher-mohr
v3.0.0
8ac9fe5
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epytope v3.0.0

Initial release of epytope. epytope is the successor project of FRED2, which was renamed to a more versioning friendly base name.

Added

  • #6 - Add CI for external tools
  • #42 - Add new Syfpeithi matrices
  • #46 - Add support for NetMHCII 2.3 and NetMHCIIpan 4.0

Changed

  • #1 - Switch CI/CD from Travis to GitHub Actions
  • #9 - Initial Python 2 to Python 3 conversion based on 2to3conv
  • #23 - Rename the package from FRED-2 to epytope
  • #42 - Extend EpitopePredictionResult structure to store rank-based scores

Fixed

  • #46 - Fix issues with MHC class-II CombinedAlleles #45
  • #46 - Do not override Allele objects #38

See CHANGELOG for the complete list of changes.

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