Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[DOC] Improving clarity of docs and figures #419

Merged
merged 56 commits into from
Nov 8, 2019
Merged
Changes from 1 commit
Commits
Show all changes
56 commits
Select commit Hold shift + click to select a range
0f1fa94
edited gitignore after testing
dowdlelt Nov 3, 2019
2e327cd
Revert "edited gitignore after testing"
dowdlelt Nov 3, 2019
42185ef
fixing typo and clarity
dowdlelt Nov 6, 2019
8375c93
cleaning up approach introduction
dowdlelt Nov 6, 2019
21899e2
more cleanup in approach
dowdlelt Nov 6, 2019
f742ab7
adding initial plot to pubs page
dowdlelt Nov 6, 2019
f6637b6
correcting plots
dowdlelt Nov 6, 2019
d02a2c6
removing comment parts
dowdlelt Nov 6, 2019
9f55ea6
getting live plots working on publication page
dowdlelt Nov 6, 2019
5d0c038
clean up and adding more WIP details
dowdlelt Nov 6, 2019
64fce83
completing live TE plot from spreasheet
dowdlelt Nov 6, 2019
ecccb9c
changing outputs to nii.gz
dowdlelt Nov 6, 2019
00a6b07
adding TR and Vox dim subplots
dowdlelt Nov 6, 2019
bce67e6
initial adding of output details
dowdlelt Nov 6, 2019
20249de
fixing tables
dowdlelt Nov 6, 2019
8cd1117
rearranging to considerations and recomendations
dowdlelt Nov 6, 2019
7cd37c1
seperating out considerations section
dowdlelt Nov 6, 2019
ef8d4b7
technically spelling things correct
dowdlelt Nov 6, 2019
2efcfa9
started fixing titles
dowdlelt Nov 6, 2019
ee7008c
addinf figures for what is ME page
dowdlelt Nov 6, 2019
4688cf3
title clarification
dowdlelt Nov 6, 2019
ac3557b
Add information about GE
dowdlelt Nov 7, 2019
fb30baf
adding mutliecho questions to the FAQ
dowdlelt Nov 7, 2019
cce9f1a
initial adding to multiecho
dowdlelt Nov 7, 2019
1da0aab
multiecho page figures and explanations
dowdlelt Nov 7, 2019
a4c1b48
pipeline and phsyics updated
dowdlelt Nov 7, 2019
d819d7a
typo
dowdlelt Nov 7, 2019
56039d4
fix headings
dowdlelt Nov 7, 2019
08a936e
possibly clean latex?
dowdlelt Nov 7, 2019
81fba41
we have eight echoes
dowdlelt Nov 7, 2019
811ab6c
more details in approach
dowdlelt Nov 7, 2019
39b667f
title change
dowdlelt Nov 7, 2019
72137ed
adding software details
dowdlelt Nov 7, 2019
0939c72
clean up of multiecho
dowdlelt Nov 8, 2019
9b16d50
additional considerations!
dowdlelt Nov 8, 2019
7b242ba
typo
dowdlelt Nov 8, 2019
8407826
update plots
dowdlelt Nov 8, 2019
e19da75
due credit in faq
dowdlelt Nov 8, 2019
1fd0178
more details on multi echo, usage
dowdlelt Nov 8, 2019
b0ac47d
tedana does accept BRIK/HEAD
dowdlelt Nov 8, 2019
1a88b85
someone wanted sentences seperated
dowdlelt Nov 8, 2019
d4c82d8
life by a thousand little edits
dowdlelt Nov 8, 2019
93befb1
GrAmMaRs
dowdlelt Nov 8, 2019
916729b
other software!
dowdlelt Nov 8, 2019
709a166
links to api in approach
dowdlelt Nov 8, 2019
e28447a
white space?
dowdlelt Nov 8, 2019
9634b71
Update docs/faq.rst
dowdlelt Nov 8, 2019
85a5f06
MRI scanners != BBQ
dowdlelt Nov 8, 2019
420593d
Merge remote-tracking branch 'dowdlelt/doc_improvements' into doc_imp…
dowdlelt Nov 8, 2019
563e643
Update docs/approach.rst
dowdlelt Nov 8, 2019
0782967
Update docs/approach.rst
dowdlelt Nov 8, 2019
cad87a9
Apply suggestions from code review, thanks a million
dowdlelt Nov 8, 2019
6977bd5
echo cleanup, and kundu 3 banish
dowdlelt Nov 8, 2019
d7e4598
noted png default
dowdlelt Nov 8, 2019
90718ed
completely changed the QC section
dowdlelt Nov 8, 2019
33e4675
pls wrk
dowdlelt Nov 8, 2019
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
MRI scanners != BBQ
  • Loading branch information
dowdlelt committed Nov 8, 2019
commit 85a5f06b4f64114b606f6851dd4042a72143fd39
11 changes: 4 additions & 7 deletions docs/faq.rst
Original file line number Diff line number Diff line change
@@ -53,14 +53,11 @@ the citation and visibility of software or methods, visit the `duecredit`_ githu
Multi-echo fMRI
---------------

Will I encounter participant heating limits more often with multi-echo fMRI?
````````````````````````````````````````````````````````````````````````````
One of the more important considerations in MR imaging is limits assocaited with the `specific absorbtion rate`_ (SAR).
This is related to how much radio frequency (RF) energy can be used in imaging over time, in order to avoid adding
to much heat to the participant.
Does multi-echo fMRI require more radio frequency pulses?
`````````````````````````````````````````````````````````
While multi-echo does lead to collecting more images during each TR (one per echo), there is still only a single
radiofrequency pulse.
For this reason, there is no change in SAR for participants intrinsic to multi-echo fMRI.
radiofrequency pulse per TR. This means that there is no change in the `specific absorbtion rate`_ (SAR) limits
for the participant.

.. _specific absorbtion rate: https://www.mr-tip.com/serv1.php?type=db1&dbs=Specific%20Absorption%20Rate