Skip to content

CAT pack v5.3
Compare
Choose a tag to compare
@bastiaanvonmeijenfeldt bastiaanvonmeijenfeldt released this 05 Nov 23:34
· 107 commits to master since this release
v5.3
3e2bf36
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Notable changes

  • GTDB support.
  • Sequence databases (NCBI nr or GTDB) can be downloaded with CAT download, and CAT databases constructed with CAT prepare.
  • Sensible defaults of DIAMOND parameters for high memory machines: --top 11 --block_size 12 --index_chunks 1.
  • You can now run CAT first, and then run BAT with the predicted proteins fasta and alignment file generated by CAT.
  • Preparations for Read Annotation Tool (RAT).
Assets 2
Loading