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23 Open 84 Closed
23 Open 84 Closed
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Issues list

Can Trimmomatic be skipped while running Wochenende ?
#223 opened Sep 3, 2024 by arpit20328
4
When input cfdna fastq data is masked (human reads are masked)
#222 opened Aug 30, 2024 by arpit20328
3
Definition of long and short read in wochenende
#221 opened Apr 4, 2024 by arpit20328
1
Not able to find "AlignerBoost.jar" on internet .
#220 opened Mar 27, 2024 by arpit20328
4
Not able to find file named "adapters_solid.fa"
#219 opened Mar 27, 2024 by arpit20328
2
remove alignerboost code
#212 opened Mar 9, 2022 by colindaven
1 task
@colindaven
reporting errors
#206 opened Jan 24, 2022 by colindaven
1 of 3 tasks
bbsplit attempt
#202 opened Dec 6, 2021 by colindaven
upgrade minimap2
#198 opened Nov 19, 2021 by colindaven
use fastp as about twice as fast as fastqc - test
#196 opened Nov 9, 2021 by colindaven
3 tasks
create optional cleanup script, especially for reporting.
#181 opened Sep 29, 2021 by colindaven
5 tasks
5
Trial tiebrush instead of mapping quality MQ
#174 opened Sep 8, 2021 by colindaven
NM bamtools curiosity : a few reads slip through
#143 opened Jun 25, 2021 by colindaven
1
reduce bash scripts to single script with functions
#140 opened Jun 24, 2021 by colindaven
@colindaven
tests
#131 opened May 25, 2021 by colindaven
@B1T0
postprocess - check dependencies at start before running
#130 opened May 21, 2021 by colindaven
3 tasks
check lambda phage reads in ONT
#98 opened Jan 8, 2021 by colindaven
2 tasks
mapping stats - revise for PE reads enhancement New feature or request
#92 opened Nov 13, 2020 by colindaven
Redesign and revise tests
#91 opened Nov 13, 2020 by colindaven
@B1T0
2
PE reads - unmapped sequences not output
#88 opened Nov 6, 2020 by colindaven
make singularity container
#61 opened Jun 9, 2020 by colindaven
2 of 8 tasks
@colindaven
6
request: allow more mismatches (scale by read length)
#60 opened May 27, 2020 by colindaven
2 of 5 tasks
@colindaven @Colorstorm
3
add long read tests
#41 opened Mar 23, 2020 by colindaven
3 tasks
1
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