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Fix double modications #188
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3f38a89
remove modification names with whitespaces
mschwoer c7d5cfc
simplify load_mod_df
mschwoer 8099d45
adapt __used_mod.yaml
mschwoer 10d6d06
adapt rest of .py files
mschwoer f6c6e94
adapt rest of __used_mod.yaml
mschwoer 08417e2
adapt notebooks
mschwoer cdb1ddf
fix one remaining issue
mschwoer 618630f
more output in test
mschwoer 3bf6624
replace whitespaces in mod names when reading HDF
mschwoer f51584b
use correct column name
mschwoer 9b076d0
make the warning always show up
mschwoer 9d4e1bf
delete unused file
mschwoer bcb04ab
deprecate changelog
mschwoer 12219d1
Merge branch 'development' into fix_double_modications
mschwoer 710f028
add support_legacy_mods_format parameter
mschwoer d79ce9f
Merge branch 'development' into fix_double_modications
mschwoer 1565ca6
Merge branch 'development' into fix_double_modications
jalew188 83bca33
Merge development updates
jalew188 d7dcad4
Merge branch 'development' into fix_double_modications
mschwoer 9d30aa1
some more replacements in notebook outputs
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The actual unimod names contain a space, so we cannot modify the MQ source PTM names
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released in 1.3.0, fixed here for 1.4.2: #241