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Add support for targeted sequencing#163

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mbhall88 wants to merge 10 commits intoMykrobe-tools:masterMykrobe-tools/mykrobe:masterfrom mbhall88:ampliconmbhall88/mykrobe:ampliconCopy head branch name to clipboard

+297-46

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Commits on Sep 29, 2022

• add targeted option

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  50daf00

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• Create combine.py

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• add combine.py to PATH

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• add panel name to ref data and logging

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• add option to compress json

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Commits on Oct 5, 2022

• add targeted bed file option

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• Update CHANGELOG.md

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• Update Dockerfile

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Commits on Oct 7, 2022

• skip adding covg to estimate depths

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• don't exclude variants not in target regions

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