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Fix paths in prepocnobs task #2459

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4f1e2a8
fix path
ShastriPaturi Feb 28, 2024
697f6f4
Merge branch 'NOAA-EMC:develop' into bugfix/jjob_prepoceanobs
ShastriPaturi Feb 29, 2024
4560ae4
Merge branch 'NOAA-EMC:develop' into bugfix/jjob_prepoceanobs
ShastriPaturi Feb 29, 2024
cb8e225
Merge branch 'NOAA-EMC:develop' into bugfix/jjob_prepoceanobs
ShastriPaturi Mar 1, 2024
5249f23
Merge branch 'NOAA-EMC:develop' into bugfix/jjob_prepoceanobs
ShastriPaturi Mar 1, 2024
9f8d5a2
Merge branch 'NOAA-EMC:develop' into bugfix/jjob_prepoceanobs
ShastriPaturi Mar 4, 2024
b4cfb2e
Merge branch 'NOAA-EMC:develop' into bugfix/jjob_prepoceanobs
ShastriPaturi Mar 4, 2024
30b2294
insitu BUFR2IODA related
ShastriPaturi Mar 4, 2024
81015c5
path to bufr2ioda
ShastriPaturi Mar 19, 2024
4426a05
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 3, 2024
e43ce9a
redo
AndrewEichmann-NOAA Apr 4, 2024
be2ac41
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 4, 2024
38d4bcb
Update parm/config/gfs/config.prepoceanobs
AndrewEichmann-NOAA Apr 5, 2024
168f5eb
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 5, 2024
084c151
tweaks from review
AndrewEichmann-NOAA Apr 5, 2024
13c081e
path wrangling
AndrewEichmann-NOAA Apr 5, 2024
670bee6
Update parm/config/gfs/config.prepoceanobs
AndrewEichmann-NOAA Apr 5, 2024
d40eeca
more tweaks
AndrewEichmann-NOAA Apr 5, 2024
3d07635
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 8, 2024
2df0dd3
added bufr2ioda links to gitignore
AndrewEichmann-NOAA Apr 8, 2024
d8e0c35
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 9, 2024
3d7758d
simplified env var assignments
AndrewEichmann-NOAA Apr 9, 2024
cd1dc55
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 9, 2024
bef3316
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 10, 2024
56c1dfa
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 12, 2024
f7649c2
Merge branch 'develop' into bugfix/jjob_prepoceanobs
AndrewEichmann-NOAA Apr 12, 2024
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2 changes: 2 additions & 0 deletions jobs/JGLOBAL_PREP_OCEAN_OBS
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,8 @@ YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COMOUT_OBS:COM_OBS_TMPL

# Add prep_marine_obs.py to PYTHONPATH
export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush:${PYTHONPATH}
# Add gen_bufr2ioda.py to PYTHONPATH
export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush/ioda/bufr2ioda:${PYTHONPATH}

###############################################################
# Run relevant script
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5 changes: 5 additions & 0 deletions parm/config/gfs/config.prepoceanobs
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@ echo "BEGIN: config.prepoceanobs"

export OCNOBS2IODAEXEC=${HOMEgfs}/sorc/gdas.cd/build/bin/gdas_obsprovider2ioda.x

[[ -n "${JSON_TMPL_DIR}" ]] || export JSON_TMPL_DIR=${HOMEgfs}/parm/gdas/ioda/bufr2ioda
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export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/soca/obs/config
export OBSPREP_YAML=@OBSPREP_YAML@
export OBS_LIST=@SOCA_OBS_LIST@
Expand All @@ -15,6 +16,10 @@ export OBS_YAML=${OBS_LIST}
# ocean analysis needs own dmpdir until standard dmpdir has full ocean obs
export DMPDIR=@DMPDIR@

# For BUFR2IODA json and python scripts
export JSON_TMPL_DIR=${HOMEgfs}/sorc/gdas.cd/parm/ioda/bufr2ioda
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export BUFR2IODA_PY_DIR=${HOMEgfs}/sorc/gdas.cd/ush/ioda/bufr2ioda
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export KEEPDATA='YES'
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# Get task specific resources
. "${EXPDIR}/config.resources" prepoceanobs
echo "END: config.prepoceanobs"
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