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prevent over-writing already created metamodules and stack modulefile #66

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merged 1 commit into from
Nov 16, 2020
Merged

prevent over-writing already created metamodules and stack modulefile #66

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107 changes: 72 additions & 35 deletions setup_modules.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -89,50 +89,87 @@ $SUDO mkdir -p $PREFIX/modulefiles/compiler/$compilerName/$compilerVersion
$SUDO mkdir -p $PREFIX/modulefiles/mpi/$compilerName/$compilerVersion/$mpiName/$mpiVersion

$SUDO mkdir -p $PREFIX/modulefiles/core/hpc-$compilerName
$SUDO cp $HPC_STACK_ROOT/modulefiles/core/hpc-$compilerName/hpc-$compilerName.lua \
$PREFIX/modulefiles/core/hpc-$compilerName/$compilerVersion.lua

$SUDO mkdir -p $PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName
$SUDO cp $HPC_STACK_ROOT/modulefiles/compiler/compilerName/compilerVersion/hpc-$mpiName/hpc-$mpiName.lua \
$PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName/$mpiVersion.lua

$SUDO mkdir -p $PREFIX/modulefiles/stack/hpc

#===============================================================================
# Query the user if using native compiler and MPI
echo "Are you using native compiler $compilerName [yes|YES|no|NO]: (DEFAULT: NO) "
read responseCompiler
if [[ $responseCompiler =~ [yYtT] ]]; then
echo -e "==========================\n USING NATIVE COMPILER"
cd $PREFIX/modulefiles/core/hpc-$compilerName
$SUDO sed -i -e '/load(compiler)/d' $compilerVersion.lua
$SUDO sed -i -e '/prereq(compiler)/d' $compilerVersion.lua
[[ -f $compilerVersion.lua-e ]] && $SUDO rm -f "$compilerVersion.lua-e" # Stupid macOS does not understand -i, and creates a backup with -e (-e is the next sed option)
echo
# Are the hpc-$compilerName.lua, hpc-$mpiName.lua or hpc/stack.lua modulefiles present at $PREFIX?
# If yes, query the user to ask to over-write
if [[ -f $PREFIX/modulefiles/core/hpc-$compilerName/$compilerVersion.lua ]]; then
echo "WARNING: $PREFIX/modulefiles/core/hpc-$compilerName/$compilerVersion.lua exists!"
echo "Do you wish to over-write? [yes|YES|no|NO]: (DEFAULT: NO) "
read response
else
response="YES"
fi
[[ $response =~ [yYtT] ]] && overwriteCompilerModulefile=YES
unset response

echo "Are you using native MPI $mpiName [yes|YES|no|NO]: (DEFAULT: NO) "
read responseMPI
if [[ $responseMPI =~ [yYtT] ]]; then
echo -e "===========================\n USING NATIVE MPI"
cd $PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName
$SUDO sed -i -e '/load(mpi)/d' $mpiVersion.lua
$SUDO sed -i -e '/prereq(mpi)/d' $mpiVersion.lua
[[ -f $mpiVersion.lua-e ]] && $SUDO rm -f "$mpiVersion.lua-e"
echo
if [[ -f $PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName/$mpiVersion.lua ]]; then
echo "WARNING: $PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName/$mpiVersion.lua exists!"
echo "Do you wish to over-write? [yes|YES|no|NO]: (DEFAULT: NO) "
read response
else
response="YES"
fi
[[ $response =~ [yYtT] ]] && overwriteMPIModulefile=YES
unset response

if [[ -f $PREFIX/modulefiles/stack/hpc/$HPC_STACK_VERSION.lua ]]; then
echo "WARNING: $PREFIX/modulefiles/stack/hpc/$HPC_STACK_VERSION.lua exists!"
echo "Do you wish to over-write? [yes|YES|no|NO]: (DEFAULT: NO) "
read response
else
response="YES"
fi
[[ $response =~ [yYtT] ]] && overwriteStackModulefile=YES
unset response

#===============================================================================
# Query the user if using native compiler and MPI, if overwriting (or writing for first time)
if [[ ${overwriteCompilerModulefile:-} =~ [yYtT] ]]; then
$SUDO cp $HPC_STACK_ROOT/modulefiles/core/hpc-$compilerName/hpc-$compilerName.lua \
$PREFIX/modulefiles/core/hpc-$compilerName/$compilerVersion.lua
echo "Are you using native compiler $compilerName [yes|YES|no|NO]: (DEFAULT: NO) "
read response
if [[ $response =~ [yYtT] ]]; then
echo -e "==========================\n USING NATIVE COMPILER"
cd $PREFIX/modulefiles/core/hpc-$compilerName
$SUDO sed -i -e '/load(compiler)/d' $compilerVersion.lua
$SUDO sed -i -e '/prereq(compiler)/d' $compilerVersion.lua
[[ -f $compilerVersion.lua-e ]] && $SUDO rm -f "$compilerVersion.lua-e" # Stupid macOS does not understand -i, and creates a backup with -e (-e is the next sed option)
echo
fi
unset response
fi

# Deploy directory for stack modulefile
$SUDO mkdir -p $PREFIX/modulefiles/stack/hpc
$SUDO cp $HPC_STACK_ROOT/modulefiles/stack/hpc/hpc.lua \
$PREFIX/modulefiles/stack/hpc/$HPC_STACK_VERSION.lua

# Replace #PREFIX# from template with $PREFIX,
# sed does not like delimiter (/) to be a part of replacement string, do magic!
cd $PREFIX/modulefiles/stack/hpc
repl=$(echo ${PREFIX} | sed -e "s#/#\\\/#g")
$SUDO sed -i -e "s/#HPC_OPT#/${repl}/g" $PREFIX/modulefiles/stack/hpc/$HPC_STACK_VERSION.lua
[[ -f $HPC_STACK_VERSION.lua-e ]] && $SUDO rm -f "$HPC_STACK_VERSION.lua-e"
if [[ ${overwriteMPIModulefile:-} =~ [yYtT] ]]; then
$SUDO cp $HPC_STACK_ROOT/modulefiles/compiler/compilerName/compilerVersion/hpc-$mpiName/hpc-$mpiName.lua \
$PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName/$mpiVersion.lua
echo "Are you using native MPI $mpiName [yes|YES|no|NO]: (DEFAULT: NO) "
read response
if [[ $response =~ [yYtT] ]]; then
echo -e "===========================\n USING NATIVE MPI"
cd $PREFIX/modulefiles/compiler/$compilerName/$compilerVersion/hpc-$mpiName
$SUDO sed -i -e '/load(mpi)/d' $mpiVersion.lua
$SUDO sed -i -e '/prereq(mpi)/d' $mpiVersion.lua
[[ -f $mpiVersion.lua-e ]] && $SUDO rm -f "$mpiVersion.lua-e"
echo
fi
unset response
fi

if [[ ${overwriteStackModulefile:-} =~ [yYtT] ]]; then
$SUDO cp $HPC_STACK_ROOT/modulefiles/stack/hpc/hpc.lua \
$PREFIX/modulefiles/stack/hpc/$HPC_STACK_VERSION.lua
# Replace #PREFIX# from template with $PREFIX,
# sed does not like delimiter (/) to be a part of replacement string, do magic!
cd $PREFIX/modulefiles/stack/hpc
repl=$(echo ${PREFIX} | sed -e "s#/#\\\/#g")
$SUDO sed -i -e "s/#HPC_OPT#/${repl}/g" $PREFIX/modulefiles/stack/hpc/$HPC_STACK_VERSION.lua
[[ -f $HPC_STACK_VERSION.lua-e ]] && $SUDO rm -f "$HPC_STACK_VERSION.lua-e"
fi

#===============================================================================

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