Releases: OHDSI/Atlas
ATLAS v2.14.1
What's Changed
- Fixed refreshToken() call when security is disabled. (#2899)
Full Changelog: v2.14.0...master-2.14
ATLAS v2.14.0
What's Changed
- Check for empty data condition. by @chrisknoll in #2834
- Concept added to a concept set has no Exclude/Descendants/Mapped flag #2838 by @anton-abushkevich in #2839
- Pinned and updated dependency versions by @chgl in #2683
- "Place of service distance" criteria for a Visit Occurrence criteria is misfunctional #2814 by @anton-abushkevich in #2841
- Move databindings loading to application bootstrap. by @chrisknoll in #2852
- Adds ability to disable browser check via config by @alondhe in #2863
- Correct vocabulary for person counts is used by @ssuvorov-fls in #2860
- Add option to force authentication by @RowanErasmus in #2861
- Fixed name of downloaded file by @ssuvorov-fls in #2864
- Fix terms and conditions content by @jack5mil in #2765
- Fixed PLE editor text for i18n. by @chrisknoll in #2871
- Make indexMessage respond to observable changes. by @chrisknoll in #2853
- Add read permissions (#2849) by @chrisknoll in #2879
- Reduce polling to /user/refresh by @chrisknoll in #2835
- Circe date offsets by @chrisknoll in #2880
- Ensure prism loads in correct order. by @chrisknoll in #2877
- Prevent multiple calls to concept set list when loading cohort editor by @anthonysena in #2888
- Reset feature analyses parameters after submission by @jack5mil in #2768
New Contributors
- @alondhe made their first contribution in #2863
- @RowanErasmus made their first contribution in #2861
- @jack5mil made their first contribution in #2765
Full Changelog: v2.13.0...v2.14.0
Contributors
Assets 3
ATLAS v2.13.0
New Features
- Tagging Management via UI
- Cohort SQL output enhanced to emulate the SqlRender Shiny application (easy parameters entry and color coding rendering)
- Generation / Executions UI standardized across different Analyses types
- Customized logo and support text allowed ('feedbackContacts', 'feedbackCustomHtmlTemplate', 'companyInfoCustomHtmlTemplate', 'showCompanyInfo' properties in your 'config-local.js')
- Cohort box plots for one and more than two Cohorts in the Cohort Characterization Analysis results
- Shading prevalence data tables in the Cohort Characterization Analysis results
- Data Source selection added to the Concept Set designer together with the person counts (PC) and descendant person counts (DPC) columns
- ACHILLES pre-computed data enriched the Concept page
- The preview button on the Concept page allows previewing the changes of a Concept Set if the Concept will be added as a Concept Set Item
- A Venn diagram has been added for visualization of Concept Sets comparison
- Concept Set comparison enhanced with a possibility to compare Concepts with a list of Concepts in a CSV file of specific structure
What's Changed
- added ability to refresh user names from ldap/ad by @ssuvorov-fls in #2771
- Tags table rendering error #2782 by @anton-abushkevich in #2784
- 403 error when removing IR generation result not displaying properly #2783 by @anton-abushkevich in #2785
- Add venn diagram by @anton-abushkevich in #2794
- Add tagging management through UI #2773 by @anton-abushkevich in #2774
- Add custom logo enhance url support by @anton-abushkevich in #2796
- Add cohorts box plots regardless of selected cohorts by @anton-abushkevich in #2797
- i18n for venn diagram by @TitrS in #2811
- Add highlights sql output by @anton-abushkevich in #2790
- Cohort graphical view - fixed position of tooltip by @anton-abushkevich in #2808
- Add chart drilldown to concept pages by @anton-abushkevich in #2806
- Generation / Executions UI with many data sources #2776 by @anton-abushkevich in #2789
- Add proportional shading to characterization data tables by @anton-abushkevich in #2788
- Add conceptset preview by @anton-abushkevich in #2792
- npm run build fails on master branch #2786 by @anton-abushkevich in #2787
- SQL Export template error on new Cohort #2825 by @anton-abushkevich in #2826
- Add conceptset preview by @anton-abushkevich in #2821
- Add data source selection to cs designer by @anton-abushkevich in #2799
- Add csv for comparison conceptsets by @anton-abushkevich in #2801
- loading record counts was removed from concept drilldown tab by @ssuvorov-fls in #2831
New Contributors
Full Changelog: v2.12.0...v2.13.0
Contributors
Assets 3
ATLAS v2.12.1
A technical release for WebAPI v2.12.1
ATLAS v2.12.0
New Features
- Add visit details criteria by @anton-abushkevich @TitrS in #2737
- Add export button to all visualizations with more export options #2727 by @anton-abushkevich @TitrS in #2736
- Add selection of inclusion rule permutations in Intersection View #2726 by @anton-abushkevich in #2735
- Add description fields for all study asset types #2724 by @anton-abushkevich @TitrS in #2733
- Phoebe 2.0 UI by @chrisknoll in #2751
- Improve user tagging usability #2722 by @anton-abushkevich in #2731
- Add warning message to reusables about using types #2684 by @anton-abushkevich in #2685
- Add notification of generated visuals within “Data Sources” upon drilldown #2725 by @anton-abushkevich @TitrS in #2734
- Add valid_start_date and valid_end_date to concept screens #2723 by @anton-abushkevich in #2732
Bug Fixes
- Concept Sets comparison allows to choose from sources unavailable to current user #2705 by @anton-abushkevich in #2706
- Loader icon does not show (font-awesome icon "fa-circle-notch") #2702 by @anton-abushkevich in #2703
- Cohort Builder: Nested Criteria doesn't appear in 'Add Dose Era' and 'Add Observation' #2707 by @anton-abushkevich in #2708
- Achilles Heel report is deprecated in Achilles #2489 by @anton-abushkevich in #2709
- User with human readable name cannot grant access to their PLP and PLE #2714 by @anton-abushkevich in #2717
- Fixed invalid redirect for /atlas without trailing slash by @chgl in #2700
- Changing Data Source does not update the reports on Atlas 2.11.1 #2741 by @anton-abushkevich in #2743
- i18n problem with lodash templates #2745 by @anton-abushkevich in #2746
- Insert from Reusable: change “Any Condition” to “Any Concept Set” #2747 by @anton-abushkevich in #2748
- Patient level prediction covariate settings include/exclude concepts popup broken. #2645 by @anton-abushkevich in #2730
- Typo - Export / Text View - Cohort Exit - suply #2750: fix default i18n by @anton-abushkevich in #2752
- Text View - Copy to Clipboard Errors #2749 by @anton-abushkevich in #2753
New Contributors
Thanks to @ttemnikova for Quality Assurance
Full Changelog: v2.11.0...v2.12.0
Contributors
Assets 3
ATLAS v2.11.1
Fixes
- Concept Sets comparison allows to choose from sources unavailable to the current user #2705
- Loader icon does not show (font-awesome icon "fa-circle-notch") #2702
- Cohort Builder: Nested Criteria doesn't appear in 'Add Dose Era' and 'Add Observation' #2707
- ACHILLES Heel report is deprecated in ACHILLES #2489
- If user's name differs from the login, the user cannot grant access to their PLP and PLE #2714
ATLAS v2.11.0
New Features
- Reusables module #2623
- Font Awesome upgrade #2585
- Import Source Code functionality extended with a possibility to specify a Vocabulary #2653
- Importing a Concept Set from the repository - augmenting the existing expression #2654
- Atlas Charts dependency update #2629
Fixes
- Data Source URLs don't work after authentication #2625
- Correct sorting in the Characterization report #2663
- Cohort Characterization with the large number of Cohorts optimization #2651
- Using the username instead of login in the filter panel #2670
- Listing only user-accessible sources in search results #2672
- Deletion alert messages unification #2680
- Doubled loading indicator when opening a Cohort #2691
- Dependency libraries update #2687
- Missing Characterization result filter options #2619
Acknowledgments
Many thanks to the release contributors @anton-abushkevich @ssuvorov-fls @chrisknoll @anthonysena @alondhe @OdysseusMark @alex-odysseus
Contributors
Assets 3
ATLAS v2.10.1
Atlas v2.10.0
New Features
#2589: Tagging capability
#2588: Audit trail
#2592: Versioning of design assets
Fixes
#2501: Disable "Add to New Concept Set" button when no concepts selected
#2539: Fix typo in Included Concept Identifier Export Area
#2514: Messages tab: loader gets stuck if the user leaves IR analysis page and returns back
#2547: Cohort reports are available only after deselecting and selecting a data source
#2548: Add error handling for missing concept from non default vocabulary
#2522: Export JSON and SQL in IR analysis should be generated after saving valid analysis design
#2543: Add back "select all" for concept selection
#2554: Update error message for cohort sampling
#2555: Fix condition status heading in cohort builder
#2557: Added exception handling for absent concept set
#2560: Select all checkbox doesn't work properly with filters
#2563: Inappropriate value in days(Cohort definition)
#2565: Inclusion population visualization shows code as label
#2568: javax.ws.rs.ForbiddenException in alert if user does not have vocabulary data source role
#2572: newThresholdValuePct is not updating in characterization
#2583: "Prevalence" count cannot be changed
#2581: Incorrect domain "provider specialty" in the attributes of the Cohort
#2579: Specimen event missed in censoring events
#2575: Improve docker configuration options
Acknowledgements
Thanks to @anton-abushkevich, @ssuvorov-fls, @chrisknoll, @alex-odysseus, @OdysseusMark, @alondhe, @blootsvoets for their contributions to this release.
Contributors
Assets 3
ATLAS v2.9.1
Fixes
#2539: "Included Concept Identifier Listnbsp" instead of "Included Concept Identifier List"
#2514: Messages tab: loader gets stuck if the user leaves IR analysis page and returns back
#2547: Cohort reports are available only after deselecting and selecting a data source
#2548: Add error handling for missing concept from non default vocabulary
#2522: Export JSON and SQL in IR analysis should be generated after saving valid analysis design
#2554: Error message is shown when number of patients is out of range
#2556: Name of attribute is now shown
#2557: Absent concept set exception is handled now
#2543: Make a checkbox available for selecting all concepts
#2560: Select all checkbox doesn't work properly with filters
#2563: Inappropriate value in days(Cohort definition)
#2565: Inclusion population visualization shows code as label
#2568: javax.ws.rs.ForbiddenException in alert if user does not have vocabulary data source role