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Release v3.3.0#1096

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azimov merged 77 commits intomainOHDSI/CohortDiagnostics:mainfrom developOHDSI/CohortDiagnostics:developCopy head branch name to clipboardSep 30, 2024

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Commits on Oct 17, 2023

• Cd char view name (#1084)

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Commits on Oct 26, 2023

• Update Migration_3-v3_2_0_suport_cohort_subsets.sql (#1086)

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• fixed manual links

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• Merge branch 'main' into develop

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• added manual for link download

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Commits on Oct 31, 2023

• Alternative method of updating time id in andromeda objects (#1091)

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Commits on Nov 16, 2023

• Version 3.3.0 (#1095)

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Commits on Nov 17, 2023

• CohortGenerator Requirement

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Commits on Nov 30, 2023

• Alternative method of updating time id in andromeda objects (#1091)

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• Fix exported null concepts in included_source_concept result

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• Fix exported null concepts in included_source_concept result

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• Update Migration_3-v3_2_0_suport_cohort_subsets.sql (#1086)

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• fixed manual links

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• added manual for link download

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• Description and news

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• addeed readr::local_edition(1) to fix issue with vroom

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• Description and news

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• Java fix on linux platforms in shiny app

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• package maintenance

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• name source concept field

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• table_prefix missing in migration

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• Removed bad migrations

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Commits on Dec 1, 2023

• Merge branch 'hotfix_3.2.5' into develop

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• fixed description for new version

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• Package maintenance

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• Merge branch 'main' into develop

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Commits on Feb 15, 2024

• Removed annotation tables from schema creation

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Commits on Feb 16, 2024

• Removed spurious download driver code

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Commits on Jun 25, 2024

• Remove cohort sample branch

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• Remove time execution from RD man checks

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• Added rsconnect extended packages, removed some remotes from description

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• Package Maintenance

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• drop statment for cohort summary stats table in results data model

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• Changes to pass R check

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• Resolved issue where relationships execution would fail if not running characterization

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Commits on Jun 26, 2024

• tidy select warning

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Commits on Jul 15, 2024

• Moved scales to imports

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• Added interactive option to install cd

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• Testing fix for integer 64 issue (#1110)

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  azimov

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• Moved logger setting above first log

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• Incidence - casting counts in R

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• Casting incidence rates as float

  azimov

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• fix column alias

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• github actions workaround

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Commits on Jul 16, 2024

• test removal of finalize

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• Segfault unrelated to call to finalize

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Commits on Jul 18, 2024

• preparing for RMM release

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Commits on Jul 22, 2024

• RMM added to CRAN

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Commits on Aug 7, 2024

• Minimum mean for covariates included in feature extraction and removed filter

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Commits on Aug 8, 2024

• Fix README of Diagnostics Explorer Shiny App (#1127)

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• Make data exportable handles empty data frame (#1109)

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Commits on Aug 14, 2024

• GitHub actions prs (#1129)

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Commits on Aug 27, 2024

• Sample only for feature extraction (#1130)

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  azimov

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Commits on Sep 10, 2024

• artifact download action updated

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• Fix subset conceptset analysis (#1132)

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• Condition for skipping database migrations on postgres

  azimov

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• Fix for sqlite export of bad values from vocabulary that will not be resolved in database connector

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• Removal of min characterization mean parameter until FeatureExtraction issue is resolved

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• Only create cohorts once

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• prevent messy test output from readr columns

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• Skip cohort creation on invalid databases

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Commits on Sep 16, 2024

• Including fix for FE

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• Including fix for FE

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• Test change for mac osx failures

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• github upload artifact updated

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• Use of CRAN cohort generator

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• renamed sqlit cran check

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• removal of ROhdsiWebApi from suggests as its only needed in example code

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• Reduce export of features exported from FE

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Commits on Sep 17, 2024

• package maintenance

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Commits on Sep 18, 2024

• Tidy cohort relationships (#1135)

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Commits on Sep 20, 2024

• Updated row descriptions

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Commits on Sep 27, 2024

• Fix incremental export for cohort relationships (#1137)

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Commits on Sep 30, 2024

• Restore original createResultsDataModel.sql (#1140)

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• fix issue 1070 (#1134)

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• Package maintenance

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• Package maintenance

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