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You can now make a new version and tag of Biochem. Consider modifying the ReadMe file.
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I have updated the version. I'll tag it after it's merged. |
AtiyahElsheikh
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* MSL version 3.2.3 * separate Interfaces/Substances/package.mo into separate components * separate the components within the package Interfaces.Compartments * Decompose the package BioChem.Interfaces.Nodes into separate components * Separate all components within Biochem/Interfaces/Reactions/package.mo into separate *.mo components * Decompose package BioChem/Interfaces/Reactions/Basics/package.mo into separate components * Separate BioChem/Interfaces/Reactions/Modifiers/package.mo into separate components * remove extra spaces from several modified package.mo * keep model declaration using partial or without partial identical to the original version * package.order files to be included in the repository * decompose BioChem/Compartments/package.mo into separate components * decompose BioChem/Substances/package.mo into separate components * Separate the Icons package within BioChem/package.mo into separate directory * Separate Biochem.Math package into a separate directory * Separate top models within the Biochem.Examples package * Separate all subpackages within Biochem.Examples into separate *.mo files. Each subpackage corresponds to a standalone example * Separate Biochem.Reactions.MichaelisMenten into separate components * separate Biochem.Reactions.MassAction.Reversible into separate components * decompose package Reactions.MassAction.Irreversible into separate components * Decompose Reactions.Inhibition into separate components * decompoase Reactions.FastEquilibrium into separate components * Decompose package Reactions into separate components * ignore backup files * annotations for version 1.0.2 * Revert "ignore backup files" This reverts commit 898a667. * remove backup files * announcing version 1.0.2 * 1.0.2: major components in separate *.mo files / MSL 3.2.3 (#13) * Issue07 separate component (#11) * MSL version 3.2.3 * separate Interfaces/Substances/package.mo into separate components * separate the components within the package Interfaces.Compartments * Decompose the package BioChem.Interfaces.Nodes into separate components * Separate all components within Biochem/Interfaces/Reactions/package.mo into separate *.mo components * Decompose package BioChem/Interfaces/Reactions/Basics/package.mo into separate components * Separate BioChem/Interfaces/Reactions/Modifiers/package.mo into separate components * remove extra spaces from several modified package.mo * keep model declaration using partial or without partial identical to the original version * package.order files to be included in the repository * decompose BioChem/Compartments/package.mo into separate components * decompose BioChem/Substances/package.mo into separate components * Separate the Icons package within BioChem/package.mo into separate directory * Separate Biochem.Math package into a separate directory * Separate top models within the Biochem.Examples package * Separate all subpackages within Biochem.Examples into separate *.mo files. Each subpackage corresponds to a standalone example * Separate Biochem.Reactions.MichaelisMenten into separate components * separate Biochem.Reactions.MassAction.Reversible into separate components * decompose package Reactions.MassAction.Irreversible into separate components * Decompose Reactions.Inhibition into separate components * decompoase Reactions.FastEquilibrium into separate components * Decompose package Reactions into separate components * Develop 1.0.2 (#12) * MSL version 3.2.3 * separate Interfaces/Substances/package.mo into separate components * separate the components within the package Interfaces.Compartments * Decompose the package BioChem.Interfaces.Nodes into separate components * Separate all components within Biochem/Interfaces/Reactions/package.mo into separate *.mo components * Decompose package BioChem/Interfaces/Reactions/Basics/package.mo into separate components * Separate BioChem/Interfaces/Reactions/Modifiers/package.mo into separate components * remove extra spaces from several modified package.mo * keep model declaration using partial or without partial identical to the original version * package.order files to be included in the repository * decompose BioChem/Compartments/package.mo into separate components * decompose BioChem/Substances/package.mo into separate components * Separate the Icons package within BioChem/package.mo into separate directory * Separate Biochem.Math package into a separate directory * Separate top models within the Biochem.Examples package * Separate all subpackages within Biochem.Examples into separate *.mo files. Each subpackage corresponds to a standalone example * Separate Biochem.Reactions.MichaelisMenten into separate components * separate Biochem.Reactions.MassAction.Reversible into separate components * decompose package Reactions.MassAction.Irreversible into separate components * Decompose Reactions.Inhibition into separate components * decompoase Reactions.FastEquilibrium into separate components * Decompose package Reactions into separate components * ignore backup files * annotations for version 1.0.2 * Revert "ignore backup files" This reverts commit 898a667. * remove backup files * announcing version 1.0.2 * missing partial declaration * missing "partial" declaration * "partial" missing * Update ReadMe (MSL library version) MSL 3.2.3 for version 1.0.2 * fix merging error. partial keyword retained * reorganizing units and substances package icons into Icons directory * MSL 4.0.0 instead of 3.2.3 * Icons package extends the standard Icon package of MSL 4.0.0 * notes on the difference between Biochem.Icons and Modelica.Icons.* in the documentation * revision information * making use of Modelica.Icons.InterfacesPackage * Making use of Modelica.Icons.* when needed, however preferring Biochem Icons when available * Back to MSL 3.2.3 Usage of MSL 4.0.0 after applying the conversion script * Move annotations to the correct position in a class (#18) The Modelica grammar does not allow annotations except at the end of a class. * Convert to MSL 4.0.0 (#19) * Convert to MSL 4.0.0 * Update version number to 1.0.3 * resolve conflict due to BioChem 1.0.3 * resolve conflict due to BioChem V 1.0.3 Co-authored-by: Martin Sjölund <martin@sjoelund.se>
AtiyahElsheikh
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Apr 17, 2021
* fix merging error. partial keyword retained * reorganizing units and substances package icons into Icons directory * MSL 4.0.0 instead of 3.2.3 * Icons package extends the standard Icon package of MSL 4.0.0 * notes on the difference between Biochem.Icons and Modelica.Icons.* in the documentation * revision information * making use of Modelica.Icons.InterfacesPackage * Making use of Modelica.Icons.* when needed, however preferring Biochem Icons when available * Back to MSL 3.2.3 Usage of MSL 4.0.0 after applying the conversion script * Move annotations to the correct position in a class (#18) The Modelica grammar does not allow annotations except at the end of a class. * Convert to MSL 4.0.0 (#19) * Convert to MSL 4.0.0 * Update version number to 1.0.3 * resolve conflict due to BioChem 1.0.3 * resolve conflict due to BioChem V 1.0.3 * Let UsersGuide package be the first one * Base Icon for almost many components * Icons for physical units * removing unused older files * Backward incompatible notes added Co-authored-by: Martin Sjölund <martin@sjoelund.se>
AtiyahElsheikh
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Apr 29, 2021
* fix merging error. partial keyword retained * reorganizing units and substances package icons into Icons directory * MSL 4.0.0 instead of 3.2.3 * Icons package extends the standard Icon package of MSL 4.0.0 * notes on the difference between Biochem.Icons and Modelica.Icons.* in the documentation * revision information * making use of Modelica.Icons.InterfacesPackage * Making use of Modelica.Icons.* when needed, however preferring Biochem Icons when available * Back to MSL 3.2.3 Usage of MSL 4.0.0 after applying the conversion script * Move annotations to the correct position in a class (#18) The Modelica grammar does not allow annotations except at the end of a class. * Convert to MSL 4.0.0 (#19) * Convert to MSL 4.0.0 * Update version number to 1.0.3 * resolve conflict due to BioChem 1.0.3 * resolve conflict due to BioChem V 1.0.3 * Icons for package * missing * remove unnecessary annotations * extra file not needed * Icons within the Interfaces.Substances package * order physical units alphabetically * correct alphabetical order * Alphabetical order * employ Modelica.Icons.IconsPackage * Variants of BioChem.Icons.Library * move package annotations to BioChem.Icons.Substances instead of additional subpackage * no need for extra package PackageIcon * Move compartments annotations to a new Icons.Compartments package * documentation * Move Interfaces.Substances annotations to BioChem.Icons * moving BioChem.Interfaces.Nodes.* annotation to the BioChem.Icons.Interfaces package * complete package names after extend statements * improve documentation * Due to the implementation of OMEdit, interchange the two extend statements so that the icon remain in green as in previous release * move annotations from BioChem.Interfaces.Compartments tp BioChem.Icons.Interfaces.Compartments * mpve unit package annotations to BioChem.Icons.Units * move graphical annotations of BioChem.Interfaces to BioChem.Icons.Interfaces * remove unnecessary extra models * complete package names * Move graphical annotations of reactions to BioChem.Icons.Interfaces.Reactions package * fix * clean * complete package name and remove unnecessary annotations * clean * icons to be classes instead of models. delete unnecessary icons. Co-authored-by: Martin Sjölund <martin@sjoelund.se>
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With #18 in place, I got this smaller diff from OMC when applying the conversion script.