OpenModelica · AtiyahElsheikh · Apr 29, 2021 · Jul 1, 2020 · Jul 2, 2020 · Mar 28, 2021
diff --git a/BioChem/Compartments/Compartment.mo b/BioChem/Compartments/Compartment.mo
@@ -2,12 +2,7 @@ within BioChem.Compartments;
 
 model Compartment "Default compartment (constant volume)"
   extends BioChem.Interfaces.Compartments.Compartment(V(stateSelect=StateSelect.prefer));
+  extends BioChem.Icons.Compartments.Compartment;
 equation
   der(V)=0 "Compartment volume is constant";
-  annotation(Documentation(info="<html>
-<h1>Compartment</h1>
-<p>
-Default compartment model.
-</p>
-</html>", revisions=""), Icon(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Text(fillColor={0,85,0}, fillPattern=FillPattern.Solid, extent={{-100,-170},{100,-120}}, textString="%name", fontName="Arial"),Rectangle(lineColor={0,85,0}, fillColor={199,199,149}, fillPattern=FillPattern.Solid, lineThickness=10, extent={{-110,-110},{110,110}}, radius=20)}), Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10})));
 end Compartment;
diff --git a/BioChem/Compartments/MainCompartment.mo b/BioChem/Compartments/MainCompartment.mo
@@ -2,6 +2,7 @@ within BioChem.Compartments;
 
 model MainCompartment "Main compartment (constant volume)"
   extends BioChem.Interfaces.Compartments.MainCompartment(V(stateSelect = StateSelect.prefer));
+  extends Icons.Compartments.MainCompartment;
 equation
   der(V) = 0 "Compartment volume is constant";
   annotation(
@@ -11,7 +12,5 @@ equation
 <p>
 Main compartment model.
 </p>
-</html>", revisions = ""),
-    Icon(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10}), graphics = {Text(fillColor = {0, 85, 0}, fillPattern = FillPattern.Solid, extent = {{-100, -170}, {100, -120}}, textString = "%name", fontName = "Arial"), Rectangle(lineColor = {0, 85, 0}, fillColor = {199, 199, 149}, fillPattern = FillPattern.Solid, lineThickness = 10, extent = {{-110, -110}, {110, 110}}, radius = 20), Text(fillPattern = FillPattern.Solid, extent = {{-82.12, -80}, {80, 80}}, textString = "main", fontName = "Arial", textStyle = {TextStyle.Bold})}),
-    Diagram(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10})));
+</html>", revisions = ""));
 end MainCompartment;
diff --git a/BioChem/Compartments/package.mo b/BioChem/Compartments/package.mo
@@ -1,7 +1,7 @@
 within BioChem;
 
 package Compartments "Different types of compartments used in the package"
-  extends Icons.Library;
+  extends Icons.Compartments;
 
   annotation(
     Documentation(info = "<html>

diff --git a/BioChem/Icons/Base.mo b/BioChem/Icons/Base.mo
@@ -1,6 +1,6 @@
 within BioChem.Icons;
 
-partial model Base
+partial class Base
   annotation(Icon(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10})), 
     Documentation(info = "<html><head></head><body><font size=\"5\">A base icon relevant for many components carrying the same annotations. Older annotations had the following attribute:</font><div><br></div><div>
 <pre style=\"margin-top: 0px; margin-bottom: 0px;\"><!--StartFragment--><span style=\" font-family:'Courier New'; font-size:12pt; color:#0000ff;\">Diagram</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">(</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#0000ff;\">coordinateSystem</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">(extent={{-</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b008b;\">100.0</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">,-</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b008b;\">100.0</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">},{</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b008b;\">100.0</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">,</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b008b;\">100.0</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">}}, preserveAspectRatio=</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b0000;\">true</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">, grid={</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b008b;\">10</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">,</span><span style=\" font-family:'Courier New'; font-size:12pt; color:#8b008b;\">10</span><span style=\"font-family: 'Courier New'; font-size: 12pt;\">}))</span><!--EndFragment--></pre><pre style=\"margin-top: 0px; margin-bottom: 0px;\"><span style=\"font-family: 'Courier New'; font-size: 12pt;\"><br></span></pre><p><span style=\"font-size: 12pt;\"><font face=\"Arial\">Since this produces empty diagram, it is not clear why is it there. So it is there for now.&nbsp;</font></span></p><p><span style=\"font-size: 12pt;\"><font face=\"Arial\">This Icon will also replace Icons.IconBase, which does not seem to be used throughout the library.&nbsp;</font></span></p><pre style=\"margin-top: 0px; margin-bottom: 0px;\"><br></pre></div></body></html>"));

diff --git a/BioChem/Icons/Compartments/Compartment.mo b/BioChem/Icons/Compartments/Compartment.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Compartments;
+
+partial class Compartment "Default compartment (constant volume)"
+  extends BioChem.Icons.Base; 
+  annotation(
+    Icon(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10}), graphics = {Text(fillColor = {0, 85, 0}, fillPattern = FillPattern.Solid, extent = {{-100, -170}, {100, -120}}, textString = "%name", fontName = "Arial"), Rectangle(lineColor = {0, 85, 0}, fillColor = {199, 199, 149}, fillPattern = FillPattern.Solid, lineThickness = 10, extent = {{-110, -110}, {110, 110}}, radius = 20)}));
+end Compartment;
diff --git a/BioChem/Icons/Compartments/MainCompartment.mo b/BioChem/Icons/Compartments/MainCompartment.mo
@@ -0,0 +1,14 @@
+within BioChem.Icons.Compartments;
+
+partial class MainCompartment "Main compartment (constant volume)"
+  extends BioChem.Icons.Base;
+  annotation(
+    Documentation(info = "<html>
+<h1>MainCompartment</h1>
+
+<p>
+Main compartment model.
+</p>
+</html>", revisions = ""),
+    Icon(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10}), graphics = {Text(fillColor = {0, 85, 0}, fillPattern = FillPattern.Solid, extent = {{-100, -170}, {100, -120}}, textString = "%name", fontName = "Arial"), Rectangle(lineColor = {0, 85, 0}, fillColor = {199, 199, 149}, fillPattern = FillPattern.Solid, lineThickness = 10, extent = {{-110, -110}, {110, 110}}, radius = 20), Text(fillPattern = FillPattern.Solid, extent = {{-82.12, -80}, {80, 80}}, textString = "main", fontName = "Arial", textStyle = {TextStyle.Bold})}));
+end MainCompartment;
diff --git a/BioChem/Icons/Compartments/package.mo b/BioChem/Icons/Compartments/package.mo
@@ -0,0 +1,15 @@
+within BioChem.Icons;
+
+package Compartments "Different types of compartments used in the package"
+  extends BioChem.Icons.Library;
+
+  annotation(
+    Documentation(info = "<html>
+<h1>Compartments</h1>
+
+<a name=\"fig1\"></a>
+<img src=\"modelica://BioChem/Resources/Images/Compartment.png\" alt=\"Fig1: Compartments\">
+ </html>", revisions = ""),
+    Icon(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10}), graphics = {Rectangle(origin = {5, -7.55952}, lineColor = {0, 85, 0}, fillColor = {199, 199, 149}, fillPattern = FillPattern.Solid, lineThickness = 10, extent = {{-70, -70}, {40, 30}}, radius = 20)}),
+    Diagram(coordinateSystem(extent = {{-100, 100}, {100, -100}}, preserveAspectRatio = true, grid = {10, 10})));
+end Compartments;
diff --git a/BioChem/Icons/Compartments/package.order b/BioChem/Icons/Compartments/package.order
@@ -0,0 +1,2 @@
+Compartment
+MainCompartment
diff --git a/BioChem/Icons/IconBase.mo b/BioChem/Icons/IconBase.mo
@@ -1,6 +1,6 @@
 within BioChem.Icons;
 
-model IconBase
+partial class IconBase
   extends Modelica.Icons.ObsoleteModel;
   annotation(
     Diagram(coordinateSystem(extent = {{-100.0, -100.0}, {100.0, 100.0}}, preserveAspectRatio = true, grid = {10, 10})),

diff --git a/BioChem/Icons/Interfaces/Compartments/Compartment.mo b/BioChem/Icons/Interfaces/Compartments/Compartment.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Compartments;
+
+partial model Compartment
+  extends BioChem.Icons.Base;
+  annotation(
+    Icon(graphics = {Text(fillColor = {0, 85, 0}, fillPattern = FillPattern.Solid, extent = {{-100, -170}, {100, -120}}, textString = "%name", fontName = "Arial"), Rectangle(lineColor = {0, 0, 127}, fillColor = {0, 170, 255}, fillPattern = FillPattern.Solid, lineThickness = 10, extent = {{-110, -110}, {110, 110}}, radius = 20)}));
+end Compartment;
diff --git a/BioChem/Icons/Interfaces/Compartments/MainCompartment.mo b/BioChem/Icons/Interfaces/Compartments/MainCompartment.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Compartments;
+
+partial class MainCompartment
+  extends BioChem.Icons.Interfaces.Compartments.Compartment;
+  annotation(
+    Icon(graphics = {Text(fillColor = {0, 85, 0}, fillPattern = FillPattern.Solid, extent = {{-100, -170}, {100, -120}}, textString = "%name", fontName = "Arial"), Text(fillPattern = FillPattern.Solid, extent = {{-82.12, -80}, {80, 80}}, textString = "main", fontName = "Arial", textStyle = {TextStyle.Bold})}));
+end MainCompartment;
diff --git a/BioChem/Icons/Interfaces/Compartments/package.mo b/BioChem/Icons/Interfaces/Compartments/package.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces;
+
+package Compartments "Properties for compartments"
+  extends BioChem.Icons.Library;
+
+end Compartments;
diff --git a/BioChem/Icons/Interfaces/Compartments/package.order b/BioChem/Icons/Interfaces/Compartments/package.order
@@ -0,0 +1,2 @@
+Compartment
+MainCompartment
diff --git a/BioChem/Icons/Interfaces/Nodes/ActivatorConnector.mo b/BioChem/Icons/Interfaces/Nodes/ActivatorConnector.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces.Nodes;
+
+partial class ActivatorConnector "Icon for a connector between activators and reactions"
+  annotation(Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Rectangle(lineColor={0,85,0}, fillColor={255,255,255}, extent={{-20,-20},{20,20}}),Line(points={{-20,20},{20,-20}}, color={0,85,0}),Line(points={{-20,-20},{20,20}}, color={0,85,0})}), Icon(coordinateSystem(extent={{-100,-100},{100,100}}, preserveAspectRatio=true, grid={10,10}), graphics={Ellipse(fillColor={0,128,0}, fillPattern=FillPattern.Solid, extent={{-100,-100},{100,100}}),Polygon(fillColor={255,255,255}, pattern=LinePattern.None, fillPattern=FillPattern.Solid, points={{-10,80},{-10,10},{-80,10},{-80,-10},{-10,-10},{-10,-80},{10,-80},{10,-10},{80,-10},{80,10},{10,10},{10,80}})}));
+end ActivatorConnector;
diff --git a/BioChem/Icons/Interfaces/Nodes/InhibitorConnector.mo b/BioChem/Icons/Interfaces/Nodes/InhibitorConnector.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces.Nodes;
+
+partial class InhibitorConnector "Icon for a connector between inhibitors and reactions"
+  annotation(Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Rectangle(lineColor={0,85,0}, fillColor={255,255,255}, extent={{-20,-20},{20,20}}),Line(points={{-20,20},{20,-20}}, color={0,85,0}),Line(points={{-20,-20},{20,20}}, color={0,85,0})}), Icon(coordinateSystem(extent={{-100,-100},{100,100}}, preserveAspectRatio=true, grid={10,10}), graphics={Ellipse(fillColor={170,0,0}, fillPattern=FillPattern.Solid, extent={{-100,-100},{100,100}}),Polygon(fillColor={255,255,255}, pattern=LinePattern.None, fillPattern=FillPattern.Solid, points={{-80,10},{-80,-10},{80,-10},{80,10}})}));
+end InhibitorConnector;
diff --git a/BioChem/Icons/Interfaces/Nodes/ModifierConnector.mo b/BioChem/Icons/Interfaces/Nodes/ModifierConnector.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces.Nodes;
+
+partial class ModifierConnector "Icon for a connector between general modifieres and reactions"
+  annotation(Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Rectangle(lineColor={0,85,0}, fillColor={255,255,255}, extent={{-20,-20},{20,20}}),Line(points={{-20,20},{20,-20}}, color={0,85,0}),Line(points={{-20,-20},{20,20}}, color={0,85,0})}), Icon(coordinateSystem(extent={{-100,-100},{100,100}}, preserveAspectRatio=true, grid={10,10}), graphics={Ellipse(fillColor={255,255,0}, fillPattern=FillPattern.Solid, extent={{-100,-100},{100,100}})}));
+end ModifierConnector;
diff --git a/BioChem/Icons/Interfaces/Nodes/ProductConnector.mo b/BioChem/Icons/Interfaces/Nodes/ProductConnector.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces.Nodes;
+
+partial class ProductConnector "Icon for a connector between substances and reactions (product side of reaction)"
+  annotation(Icon(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Ellipse(lineColor={0,85,127}, fillColor={255,255,255}, fillPattern=FillPattern.Solid, extent={{-100,-100},{100,100}})}), Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Rectangle(lineColor={0,85,0}, fillColor={255,255,255}, extent={{-20,-20},{20,20}}),Line(points={{-20,20},{20,-20}}, color={0,85,0}),Line(points={{-20,-20},{20,20}}, color={0,85,0})}));
+end ProductConnector;
diff --git a/BioChem/Icons/Interfaces/Nodes/SubstanceConnector.mo b/BioChem/Icons/Interfaces/Nodes/SubstanceConnector.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces.Nodes;
+
+partial class SubstanceConnector "Icon for a connector between substances and reactions"
+  annotation(Icon(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Ellipse(lineColor={0,85,0}, fillColor={0,85,127}, extent={{-100,-100},{100,100}})}), Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Rectangle(lineColor={0,85,0}, fillColor={255,255,255}, extent={{-20,-20},{20,20}}),Line(points={{-20,20},{20,-20}}, color={0,85,0}),Line(points={{-20,-20},{20,20}}, color={0,85,0})}));
+end SubstanceConnector;
diff --git a/BioChem/Icons/Interfaces/Nodes/SubstrateConnector.mo b/BioChem/Icons/Interfaces/Nodes/SubstrateConnector.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces.Nodes;
+
+partial class SubstrateConnector "Icon for a connector between substances and reactions (substrate side of reaction)"
+  annotation(Icon(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Ellipse(lineColor={0,85,127}, fillColor={0,85,127}, fillPattern=FillPattern.Solid, extent={{-100,-100},{100,100}})}), Diagram(coordinateSystem(extent={{-100,100},{100,-100}}, preserveAspectRatio=true, grid={10,10}), graphics={Rectangle(lineColor={0,85,0}, fillColor={255,255,255}, extent={{-20,-20},{20,20}}),Line(points={{-20,20},{20,-20}}, color={0,85,0}),Line(points={{-20,-20},{20,20}}, color={0,85,0})}));
+end SubstrateConnector;
diff --git a/BioChem/Icons/Interfaces/Nodes/package.mo b/BioChem/Icons/Interfaces/Nodes/package.mo
@@ -0,0 +1,5 @@
+within BioChem.Icons.Interfaces;
+package Nodes "Connector interfaces used in the package"
+  extends BioChem.Icons.Library;
+
+end Nodes;
diff --git a/BioChem/Icons/Interfaces/Nodes/package.order b/BioChem/Icons/Interfaces/Nodes/package.order
@@ -0,0 +1,6 @@
+ActivatorConnector
+InhibitorConnector
+ModifierConnector
+ProductConnector
+SubstanceConnector
+SubstrateConnector
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/FastEquilibrium.mo b/BioChem/Icons/Interfaces/Reactions/Basics/FastEquilibrium.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class FastEquilibrium "Basics for a reaction edge"
+  extends BioChem.Icons.Base;
+  annotation(
+    Icon(graphics = {Line(points = {{-50.0, 0.0}, {50.0, 0.0}}, color = {0, 0, 255}, pattern = LinePattern.DashDotDot, thickness = 2), Text(origin = {-0.0, 0.0}, fillColor = {77, 77, 77}, fillPattern = FillPattern.Solid, extent = {{-100.0, -150.0}, {97.9, -100.0}}, textString = "%name", fontName = "Arial")}));
+end FastEquilibrium;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/FourProducts.mo b/BioChem/Icons/Interfaces/Reactions/Basics/FourProducts.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class FourProducts
+  annotation(
+    Icon(graphics = {Line(points = {{50, 0}, {62.5, 87.5}, {100, 87.5}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{50, 0}, {62.5, -87.5}, {100, -87.5}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{50, 0}, {62.5, 37.5}, {100, 37.5}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{50, 0}, {62.5, -37.5}, {100, -37.5}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35, smooth = Smooth.Bezier)}));
+end FourProducts;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/FourSubstrates.mo b/BioChem/Icons/Interfaces/Reactions/Basics/FourSubstrates.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class FourSubstrates
+  extends BioChem.Icons.Base;
+  annotation(Icon(graphics={Line(points={{-100,87.5},{-62.5,87.5},{-50,0}}, color={170,0,0}, smooth=Smooth.Bezier),Line(points={{-100,-87.5},{-62.5,-87.5},{-50,0}}, color={170,0,0}, smooth=Smooth.Bezier),Line(points={{-100,-37.5},{-62.5,-37.5},{-50,0}}, color={170,0,0}, smooth=Smooth.Bezier),Line(points={{-100,37.5},{-62.5,37.5},{-50,0}}, color={170,0,0}, smooth=Smooth.Bezier)}));
+end FourSubstrates;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/FourSubstratesReversible.mo b/BioChem/Icons/Interfaces/Reactions/Basics/FourSubstratesReversible.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class FourSubstratesReversible
+   extends BioChem.Icons.Base;
+   annotation(
+    Icon(graphics = {Line(points = {{-100, 87.5}, {-62.5, 87.5}, {-50, 0}}, color = {170, 0, 0}, arrow = {Arrow.Open, Arrow.None}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{-100, -87.5}, {-62.5, -87.5}, {-50, 0}}, color = {170, 0, 0}, arrow = {Arrow.Open, Arrow.None}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{-100, -37.5}, {-62.5, -37.5}, {-50, 0}}, color = {170, 0, 0}, arrow = {Arrow.Open, Arrow.None}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{-100, 37.5}, {-62.5, 37.5}, {-50, 0}}, color = {170, 0, 0}, arrow = {Arrow.Open, Arrow.None}, arrowSize = 35, smooth = Smooth.Bezier)}));
+end FourSubstratesReversible;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/MultipleProducts.mo b/BioChem/Icons/Interfaces/Reactions/Basics/MultipleProducts.mo
@@ -0,0 +1,8 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class MultipleProducts "SubstanceConnector for arbitrary number of products"
+  extends BioChem.Icons.Base;
+  annotation(
+   Icon(graphics = {Line(points = {{48.33, 0.0}, {98.33, 0.0}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 50), Ellipse(origin = {112.5, -0.0}, lineColor = {170, 0, 0}, fillColor = {170, 0, 0}, extent = {{-20.0, -20.0}, {20.0, 20.0}})}));
+end MultipleProducts;
+
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/MultipleSubstrates.mo b/BioChem/Icons/Interfaces/Reactions/Basics/MultipleSubstrates.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class MultipleSubstrates "SubstanceConnector for arbitrary number of substrates"
+  extends BioChem.Icons.Base;
+  annotation(
+    Icon(graphics = {Line(points = {{-100, 0}, {-50, 0}}, color = {170, 0, 0}), Ellipse(lineColor = {170, 0, 0}, fillColor = {170, 0, 0}, extent = {{-131.2, -18.75}, {-93.75, 18.75}})}));
+end MultipleSubstrates;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/MultipleSubstratesReversible.mo b/BioChem/Icons/Interfaces/Reactions/Basics/MultipleSubstratesReversible.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class MultipleSubstratesReversible "SubstanceConnector for arbitrary number of substrates"
+   extends BioChem.Icons.Base;
+   annotation(
+    Icon(graphics = {Line(points = {{-50.0, 0.0}, {-100.0, 0.0}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 50), Ellipse(origin = {-112.5, 0.0}, fillColor = {255, 255, 255}, extent = {{-20.0, -20.0}, {20.0, 20.0}})}));
+end MultipleSubstratesReversible;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/OneProduct.mo b/BioChem/Icons/Interfaces/Reactions/Basics/OneProduct.mo
@@ -0,0 +1,7 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class OneProduct "SubstanceConnector for one product"
+  extends BioChem.Icons.Base;
+  annotation(
+    Icon(graphics = {Line(points = {{50, 0}, {100, 0}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 50)}));
+end OneProduct;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/OneSubstrate.mo b/BioChem/Icons/Interfaces/Reactions/Basics/OneSubstrate.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class OneSubstrate "SubstanceConnector for one substrate"
+   extends BioChem.Icons.Base;
+   annotation(Icon(graphics={Line(points={{-50,0},{-100,0}}, color={170,0,0}, arrowSize=25)}));
+end OneSubstrate;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/OneSubstrateReversible.mo b/BioChem/Icons/Interfaces/Reactions/Basics/OneSubstrateReversible.mo
@@ -0,0 +1,8 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class OneSubstrateReversible
+  extends BioChem.Icons.Base;
+
+   annotation(
+    Icon(graphics = {Line(points = {{-50.0, 0.0}, {-100.0, 0.0}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 50)}));
+end OneSubstrateReversible;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/Reaction.mo b/BioChem/Icons/Interfaces/Reactions/Basics/Reaction.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class Reaction "Basics for a reaction edge"
+  annotation(
+    Icon(graphics = {Line(points = {{-50, 0}, {50, 0}}, color = {170, 0, 0}), Text(origin = {-4.44089e-15, 1.42109e-14}, fillColor = {77, 77, 77}, fillPattern = FillPattern.Solid, extent = {{-100, -150}, {97.9, -100}}, textString = "%name", fontName = "Arial")}));
+end Reaction;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/ThreeProducts.mo b/BioChem/Icons/Interfaces/Reactions/Basics/ThreeProducts.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class ThreeProducts "SubstanceConnectors for three products"
+  annotation(
+    Icon(graphics = {Line(points = {{50, 0}, {100, 0}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35), Line(points = {{50, 0}, {62.5, 75}, {100, 75}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35, smooth = Smooth.Bezier), Line(points = {{50, 0}, {62.5, -75}, {100, -75}}, color = {170, 0, 0}, arrow = {Arrow.None, Arrow.Open}, arrowSize = 35, smooth = Smooth.Bezier)}));
+end ThreeProducts;
diff --git a/BioChem/Icons/Interfaces/Reactions/Basics/ThreeSubstrates.mo b/BioChem/Icons/Interfaces/Reactions/Basics/ThreeSubstrates.mo
@@ -0,0 +1,6 @@
+within BioChem.Icons.Interfaces.Reactions.Basics;
+
+partial class ThreeSubstrates "SubstanceConnectors for three substrates"
+   annotation(
+    Icon(graphics = {Line(points = {{-50, 0}, {-62.5, 75}, {-100, 75}}, color = {170, 0, 0}, smooth = Smooth.Bezier), Line(points = {{-100, 0}, {-50, 0}}, color = {170, 0, 0}), Line(points = {{-100, -75}, {-62.5, -75}, {-50, 0}}, color = {170, 0, 0}, smooth = Smooth.Bezier)}));
+end ThreeSubstrates;