Jupyter docker: incremental build to get latest unreleased threddsclient for Thredds 5 compat #134
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…s v5 (#420) See Ouranosinc/PAVICS-e2e-workflow-tests#134 for more info. ## Changes **Non-breaking changes** - New jupyter env image <!-- The test suite can be run using a different DACCS config with ``birdhouse_daccs_configs_branch: branch_name`` in the PR description. To globally skip the test suite regardless of the commit message use ``birdhouse_skip_ci: true`` in the PR description. --> birdhouse_daccs_configs_branch: master birdhouse_skip_ci: false
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…t xclim and ravenpy to smooth transition (#121) # Overview This new full build has latest of almost everything except `xclim` and `ravenpy` as intermediate step to smooth transition to `pandas` 2.2 freq strings changes. ## Changes - New: save conda env export, DockerHub build logs and Jenkins test result in the repo to track changes much more easily between releases - Jenkins: add `SAVE_RESULTING_NOTEBOOK_TIMEOUT` for slow notebooks or slow machine - Jupyter env changes: - add `conda-pack` so we can export the conda env outside of the docker image if need to run locally without docker - upgrade from Python 3.9 to 3.11 - Relevant changes (alphabetical order): ```diff - - birdy=0.8.4=pyh1a96a4e_0 + - birdhouse-birdy==0.8.7 # major upgrade from v2 to v3 - - bokeh=2.4.3=pyhd8ed1ab_3 + - bokeh=3.4.1=pyhd8ed1ab_0 - - cartopy=0.21.1=py39h6e7ad6e_0 + - cartopy=0.23.0=py311h320fe9a_0 - - cf_xarray=0.8.0=pyhd8ed1ab_0 + - cf_xarray=0.9.0=pyhd8ed1ab_0 - - cfgrib=0.9.10.4=pyhd8ed1ab_0 + - cfgrib=0.9.11.0=pyhd8ed1ab_0 - - cftime=1.6.2=py39h2ae25f5_1 + - cftime=1.6.3=py311h1f0f07a_0 - - climpred=2.3.0=pyhd8ed1ab_0 + - climpred=2.4.0=pyhd8ed1ab_0 - - clisops=0.9.6=pyh1a96a4e_0 + - clisops=0.13.0=pyhca7485f_0 - - dask=2023.5.1=pyhd8ed1ab_0 + - dask=2024.5.0=pyhd8ed1ab_0 - - geopandas=0.13.0=pyhd8ed1ab_0 + - geopandas=0.14.4=pyhd8ed1ab_0 - - hvplot=0.8.3=pyhd8ed1ab_0 + - hvplot=0.9.2=pyhd8ed1ab_0 - - numpy=1.23.5=py39h3d75532_0 + - numpy=1.24.4=py311h64a7726_0 - - numba=0.57.0=py39hb75a051_1 + - numba=0.59.1=py311h96b013e_0 # major upgrade from v1 to v2 - - pandas=1.3.5=py39hde0f152_0 + - pandas=2.1.4=py311h320fe9a_0 # major upgrade to v1 - - panel=0.14.4=pyhd8ed1ab_0 + - panel=1.4.2=pyhd8ed1ab_0 # major upgrade from v1 to v2 - - pydantic=1.10.8=py39hd1e30aa_0 + - pydantic=2.7.1=pyhd8ed1ab_0 # Python 3.9 to 3.11 - - python=3.9.16=h2782a2a_0_cpython + - python=3.11.6=hab00c5b_0_cpython - - raven-hydro=0.2.1=py39h8e2dbb5_1 + - raven-hydro=0.2.4=py311h64a4d7b_0 - - ravenpy=0.12.1=py39hf3d152e_0 + - ravenpy==0.13.1 - - rioxarray=0.14.1=pyhd8ed1ab_0 + - rioxarray=0.15.5=pyhd8ed1ab_0 - - roocs-utils=0.6.4=pyh1a96a4e_0 + - roocs-utils=0.6.8=pyhd8ed1ab_0 - - scipy=1.9.1=py39h8ba3f38_0 + - scipy=1.13.0=py311h517d4fd_1 - - xarray=2023.1.0=pyhd8ed1ab_0 + - xarray=2023.8.0=pyhd8ed1ab_0 - - xclim=0.43.0=py39hf3d152e_1 + - xclim=0.47.0=py311h38be061_0 - - xesmf=0.7.1=pyhd8ed1ab_0 + - xesmf=0.8.5=pyhd8ed1ab_0 - - xskillscore=0.0.24=pyhd8ed1ab_0 + - xskillscore=0.0.26=pyhd8ed1ab_0 + - xscen=0.8.2=pyhd8ed1ab_0 + - figanos==0.3.0 - - xncml==0.2 + - xncml==0.4.0 ``` ## Test - Deployed as "beta" image in production for bokeh visualization performance regression testing. - Manual test notebook https://github.com/Ouranosinc/PAVICS-landing/blob/master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb for bokeh visualization performance and it looks fine. - Jenkins build: - Default notebooks, all passed: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/54792e6510adfcd1bb21e1bd31fdfa36c5c634e0/docker/saved_buildout/jenkins-buildlogs-default.txt - Raven notebooks, only known `HydroShare_integration.ipynb` failing: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/931cfc924a147d07b59e88badff9f170e852a03b/docker/saved_buildout/jenkins-buildlogs-raven.txt ## Related Issue / Discussion - Matching notebook fixes: - Pavics-sdi: PR Ouranosinc/pavics-sdi#321 - Finch: PR url: None - PAVICS-landing: PR Ouranosinc/PAVICS-landing#78 - RavenPy: PR CSHS-CWRA/RavenPy#356 - Resolves Ouranosinc/PAVICS-landing#65 - Resolves Ouranosinc/PAVICS-landing#66 - Deployment to PAVICS: bird-house/birdhouse-deploy#453 - Jenkins-config changes for new notebooks: PR url: None - Other issues found while working on this one - computationalmodelling/nbval#204 - jupyterlab-contrib/jupyter-archive#132 - CSHS-CWRA/RavenPy#357 - CSHS-CWRA/RavenPy#361 - CSHS-CWRA/RavenPy#362 - Previous release: PR #134 ## Additional Information Full diff conda env export: 81deb99...931cfc9#diff-e8f2a6a53085ae29bb7cedc701c1d345a330651ae971555e85a5c005e94f4cd9 Full new conda env export: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/931cfc924a147d07b59e88badff9f170e852a03b/docker/saved_buildout/conda-env-export.yml DockerHub build log https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/931cfc924a147d07b59e88badff9f170e852a03b/docker/saved_buildout/docker-buildlogs.txt
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Overview
Incremental build to get latest unreleased
threddsclientfor Thredds 5 compatibility, to get this specific commit bird-house/threddsclient@441e727.Incremental build is chosen over full build to speed up release process, at the expense of not having the latest and greatest of everything. Also because this do not pull any new indirect dependencies which might cause incompatibility with existing packages.
Changes
Test
Related Issue / Discussion
Matching notebook fixes:
Deployment to PAVICS: jupyter: new incremental build for compatibility with upcoming Thredds v5 bird-house/birdhouse-deploy#420
Jenkins-config changes for new notebooks: PR url
Other issues found while working on this one
Previous release: Jupyter docker: incremental build to add
fstd2ncto convert RPN files (from Environment Canada) to netCDF files #132Additional Information
Full diff conda env export:
py39-230601-1-update231122-py39-230601-1-update240116-conda-env-export.diff.txt
Full new conda env export:
py39-230601-1-update240116-conda-env-export.yml.txt
DockerHub build log
py39-230601-1-update240116-buildlogs.txt