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Nb 4 do not work with Python 3.10 (ValueError: popmean.shape[axis]
must equal 1.)
#65
Nb 4 do not work with Python 3.10 (ValueError: popmean.shape[axis]
must equal 1.)
#65
Comments
popmean.shape[axis]
must equal 1.)
Is it possible that the fix for that was introduced here: Ouranosinc/xclim@56d6ef7 is not working properly? We even test to ensure that warnings are being properly raised! (Ouranosinc/xclim@60e9a70) This fix was introduced in the latest |
Potential cause found! The changes in @tlvu What version of scipy is running in the environment? |
py310 not working : py39 working: |
I don't have a full understanding of what Not sure why this didn't fail before. One workaround is to compute the test only on land. fut = ds_ens.sel(time=slice("2071", "2100")).chunk(dict(realization=-1))
ref = ds_ens.sel(time=slice("1981", "2010")).chunk(dict(realization=-1))
f = fut.sel(time=fut["time.season"] == "JJA").tx_days_above
r = ref.sel(time=ref["time.season"] == "JJA").tx_days_above
import xarray as xr
tmp = xr.Dataset(dict(ref=r, fut=f))
# Find coordinates that are all NaNs
mask = (f.isnull().all(dim="time") + f.isnull().all(dim="time")).isel(realization=0).compute()
# Compute significance only on valid coordinates
valid = tmp.groupby(mask)[False]
chng_f, pos_f = xens.change_significance(valid.fut, valid.ref, test="ttest")
# Unstack results
chng_f = chng_f.unstack()
pos_f = pos_f.unstack() Now for a reason I don't understand, with the Alpha env on Jupyter the results are all NaNs or inf, so there might be something else going on. |
PR for fix in xclim: Ouranosinc/xclim#1380 |
No changes will be needed to the NB if we merge the xclim PR and release a new xclim version before we update scipy to 1.10 in the jupyter env. |
Just to confirm, we will not be releasing a new xclim at 17h20 on a Friday, right? |
… and latest of everything else (#115) ## Changes - Jenkins: add RavenPy repo - Re-organize tutorial notebooks on PAVICS: dropped `esgf-compute-api` examples and group all Raven notebooks (RavenWPS and RavenPy) into one folder `raven`. - Jupyter env changes: - Update to python `3.9`, from `3.8` - Adds `esgf-pyclient` for esgf-dap.ipynb (https://github.com/Ouranosinc/pavics-sdi/pull/269) - Adds `xncml` for gen_catalog refactoring (https://github.com/Ouranosinc/pavics-vdb/pull/46) - Adds Globus Personnal Connect to be able to transfer big files in and out of the Jupyter env - Fixes annoying harmless error `ERROR 1: PROJ: proj_create_from_database: Open of /opt/conda/envs/birdy/share/proj failed` - Existing `intake-esm` pin: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/issues/109 - Shrink image by almost 2G - Relevant changes (alphabetical order): ```diff < - birdy=0.8.1=pyh6c4a22f_1 > - birdy=0.8.4=pyh1a96a4e_0 < - cf_xarray=0.7.5=pyhd8ed1ab_0 > - cf_xarray=0.8.0=pyhd8ed1ab_0 < - clisops=0.9.3=pyh1a96a4e_0 > - clisops=0.9.6=pyh1a96a4e_0 < - dask=2022.11.1=pyhd8ed1ab_0 > - dask=2023.5.1=pyhd8ed1ab_0 < - esmf=8.2.0=mpi_mpich_h5a1934d_102 < - esmpy=8.2.0=mpi_mpich_py38h9147699_101 > - esmf=8.4.0=mpi_mpich_hc592774_104 > - esmpy=8.4.0=mpi_mpich_py39h3088dd8_102 < - fiona=1.8.22=py38h85a5e0f_5 > - fiona=1.9.1=py39hbc5ff6d_0 < - flox=0.6.4=pyhd8ed1ab_0 > - flox=0.7.2=pyhd8ed1ab_0 < - gdal=3.6.0=py38h58634bd_13 > - gdal=3.6.2=py39hc6cd174_6 < - owslib=0.27.2=pyhd8ed1ab_1 > - owslib=0.28.1=pyhd8ed1ab_0 # new > - pyogrio=0.5.1=py39hbc5ff6d_0 < - python=3.8.16=he550d4f_1_cpython > - python=3.9.16=h2782a2a_0_cpython < - raven-hydro=3.0.4.322=ha46ed4c_2 < - ravenpy=0.9.0=pyha21a80b_0 > - raven-hydro=0.2.1=py39h8e2dbb5_1 > - ravenpy=0.12.0=py39hf3d152e_2 < - rioxarray=0.13.1=pyhd8ed1ab_0 > - rioxarray=0.14.1=pyhd8ed1ab_0 < - roocs-utils=0.6.3=pyh1a96a4e_0 > - roocs-utils=0.6.4=pyh1a96a4e_0 # new > - seaborn=0.12.2=hd8ed1ab_0 < - xarray=2022.10.0=pyhd8ed1ab_0 > - xarray=2023.1.0=pyhd8ed1ab_0 < - xclim=0.39.0=pyhd8ed1ab_0 > - xclim=0.43.0=py39hf3d152e_1 < - xesmf=0.6.3=pyhd8ed1ab_1 > - xesmf=0.7.1=pyhd8ed1ab_0 # new > - hsclient==0.3.3 ``` ## Test - Deployed as "beta" image in production for bokeh visualization performance regression testing. - Manual test notebook https://github.com/Ouranosinc/PAVICS-landing/blob/master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb for bokeh visualization performance and it looks fine. - Jenkins build, all passed: [job-PAVICS-e2e-workflow-tests-new-docker-build-198-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621190/job-PAVICS-e2e-workflow-tests-new-docker-build-198-consoleText.txt) [ravenpy-job-PAVICS-e2e-workflow-tests-new-docker-build-200-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621191/ravenpy-job-PAVICS-e2e-workflow-tests-new-docker-build-200-consoleText.txt) ## Related Issue / Discussion - Matching notebook fixes: - Pavics-sdi: https://github.com/Ouranosinc/pavics-sdi/pull/281 - Finch: https://github.com/bird-house/finch/pull/275 - PAVICS-landing: https://github.com/Ouranosinc/PAVICS-landing/pull/64 - RavenPy: https://github.com/CSHS-CWRA/RavenPy/pull/287 - Deployment to PAVICS: https://github.com/bird-house/birdhouse-deploy/pull/332 - Jenkins-config changes for new RavenPy notebooks: https://github.com/Ouranosinc/jenkins-config/pull/15 - Other issues found while working on this one - https://github.com/Ouranosinc/PAVICS-landing/issues/66 - https://github.com/Ouranosinc/PAVICS-landing/issues/65 ## Additional Information Full diff conda env export: [221130-update230403-230530-1-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621128/221130-update230403-230530-1-conda-env-export.diff.txt) ```diff 9,11c9,12 < - affine=2.3.1=pyhd8ed1ab_0 < - aiobotocore=2.4.0=pyhd8ed1ab_0 < - aiohttp=3.8.3=py38h0a891b7_1 --- > - affine=2.4.0=pyhd8ed1ab_0 > - aiobotocore=2.5.0=pyhd8ed1ab_0 > - aiofiles=22.1.0=pyhd8ed1ab_0 > - aiohttp=3.8.4=py39h72bdee0_0 14c15,16 < - alembic=1.8.1=pyhd8ed1ab_0 --- > - aiosqlite=0.19.0=pyhd8ed1ab_0 > - alembic=1.11.1=pyhd8ed1ab_0 16,18c18,20 < - altair=4.2.0=pyhd8ed1ab_1 < - ansi2html=1.8.0=py38h578d9bd_1 < - anyio=3.6.2=pyhd8ed1ab_0 --- > - altair=5.0.1=pyhd8ed1ab_0 > - ansi2html=1.8.0=py39hf3d152e_1 > - anyio=3.6.1=pyhd8ed1ab_1 22,23c24 < - argon2-cffi-bindings=21.2.0=py38h0a891b7_3 < - arrow-cpp=11.0.0=ha770c72_9_cpu --- > - argon2-cffi-bindings=21.2.0=py39hb9d737c_3 26c27 < - asttokens=2.2.0=pyhd8ed1ab_0 --- > - asttokens=2.2.1=pyhd8ed1ab_0 30,44c31,45 < - attrs=22.1.0=pyh71513ae_1 < - aws-c-auth=0.6.26=hf365957_1 < - aws-c-cal=0.5.21=h48707d8_2 < - aws-c-common=0.8.14=h0b41bf4_0 < - aws-c-compression=0.2.16=h03acc5a_5 < - aws-c-event-stream=0.2.20=h00877a2_4 < - aws-c-http=0.7.6=hf342b9f_0 < - aws-c-io=0.13.19=h5b20300_3 < - aws-c-mqtt=0.8.6=hc4349f7_12 < - aws-c-s3=0.2.7=h909e904_1 < - aws-c-sdkutils=0.1.8=h03acc5a_0 < - aws-checksums=0.1.14=h03acc5a_5 < - aws-crt-cpp=0.19.8=hf7fbfca_12 < - aws-sdk-cpp=1.10.57=h17c43bd_8 < - babel=2.11.0=pyhd8ed1ab_0 --- > - attrs=23.1.0=pyh71513ae_1 > - aws-c-auth=0.6.27=he072965_1 > - aws-c-cal=0.5.26=hf677bf3_1 > - aws-c-common=0.8.19=hd590300_0 > - aws-c-compression=0.2.16=hbad4bc6_7 > - aws-c-event-stream=0.2.20=hb4b372c_7 > - aws-c-http=0.7.7=h2632f9a_4 > - aws-c-io=0.13.21=h9fef7b8_5 > - aws-c-mqtt=0.8.11=h2282364_1 > - aws-c-s3=0.3.0=hcb5a9b2_2 > - aws-c-sdkutils=0.1.9=hbad4bc6_2 > - aws-checksums=0.1.14=hbad4bc6_7 > - aws-crt-cpp=0.20.2=he0fdcb3_0 > - aws-sdk-cpp=1.10.57=h059227d_13 > - babel=2.12.1=pyhd8ed1ab_1 48d48 < - backports.zoneinfo=0.2.1=py38h0a891b7_7 50,51c50,51 < - bcrypt=3.2.2=py38h0a891b7_1 < - beautifulsoup4=4.11.1=pyha770c72_0 --- > - bcrypt=3.2.2=py39hb9d737c_1 > - beautifulsoup4=4.12.2=pyha770c72_0 53,56c53,56 < - birdy=0.8.1=pyh6c4a22f_1 < - bleach=5.0.1=pyhd8ed1ab_0 < - blinker=1.5=pyhd8ed1ab_0 < - blosc=1.21.3=hafa529b_0 --- > - birdy=0.8.4=pyh1a96a4e_0 > - bleach=6.0.0=pyhd8ed1ab_0 > - blinker=1.6.2=pyhd8ed1ab_0 > - blosc=1.21.4=h0f2a231_0 58,62c58,62 < - boltons=21.0.0=pyhd8ed1ab_0 < - boost-cpp=1.78.0=h75c5d50_1 < - boto3=1.24.59=pyhd8ed1ab_0 < - botocore=1.27.59=pyhd8ed1ab_0 < - bottleneck=1.3.5=py38h26c90d9_1 --- > - boltons=23.0.0=pyhd8ed1ab_0 > - boost-cpp=1.78.0=h5adbc97_2 > - boto3=1.26.76=pyhd8ed1ab_0 > - botocore=1.29.76=pyhd8ed1ab_0 > - bottleneck=1.3.7=py39h389d5f1_0 66,67c66 < - brotli-python=1.0.9=py38hfa26641_8 < - brotlipy=0.7.0=py38h0a891b7_1005 --- > - brotlipy=0.7.0=py39hb9d737c_1005 70,72c69,71 < - c-ares=1.18.1=h7f98852_0 < - c-blosc2=2.5.0=h7a311fb_0 < - ca-certificates=2022.12.7=ha878542_0 --- > - c-ares=1.19.1=hd590300_0 > - c-blosc2=2.9.2=hb4ffafa_0 > - ca-certificates=2023.5.7=hbcca054_0 75c74 < - cachetools=5.2.0=pyhd8ed1ab_0 --- > - cachetools=5.3.0=pyhd8ed1ab_0 77c76 < - cartopy=0.21.0=py38hf6c3373_3 --- > - cartopy=0.21.1=py39h6e7ad6e_0 80,82c79,81 < - cdms2=3.1.5=py38hc1ef740_14 < - cdtime=3.1.4=py38hc54c017_7 < - certifi=2022.12.7=pyhd8ed1ab_0 --- > - cdms2=3.1.5=py39h36de48d_15 > - cdtime=3.1.4=py39he83c29a_7 > - certifi=2023.5.7=pyhd8ed1ab_0 84,86c83,85 < - cf_xarray=0.7.5=pyhd8ed1ab_0 < - cffi=1.15.1=py38h4a40e3a_2 < - cfgrib=0.9.10.3=pyhd8ed1ab_0 --- > - cf_xarray=0.8.0=pyhd8ed1ab_0 > - cffi=1.15.1=py39he91dace_3 > - cfgrib=0.9.10.4=pyhd8ed1ab_0 89,90c88,89 < - cftime=1.6.2=py38h26c90d9_1 < - charls=2.3.4=h9c3ff4c_0 --- > - cftime=1.6.2=py39h2ae25f5_1 > - charls=2.4.2=h59595ed_0 96,97c95,96 < - clisops=0.9.3=pyh1a96a4e_0 < - cloudpickle=2.2.0=pyhd8ed1ab_0 --- > - clisops=0.9.6=pyh1a96a4e_0 > - cloudpickle=2.2.1=pyhd8ed1ab_0 100,105c99,104 < - commonmark=0.9.1=py_0 < - configurable-http-proxy=4.5.3=he2f69ee_3 < - contourpy=1.0.6=py38h43d8883_0 < - coverage=6.5.0=py38h0a891b7_1 < - cryptography=40.0.1=py38h3d167d9_0 < - curl=7.88.1=hdc1c0ab_1 --- > - comm=0.1.3=pyhd8ed1ab_0 > - configurable-http-proxy=4.5.4=he2f69ee_2 > - contourpy=1.0.7=py39h4b4f3f3_0 > - coverage=7.2.7=py39hd1e30aa_0 > - cryptography=40.0.2=py39h079d5ae_0 > - curl=8.1.2=h409715c_0 107,111c106,110 < - cytoolz=0.12.0=py38h0a891b7_1 < - dash=2.7.0=pyhd8ed1ab_0 < - dask=2022.11.1=pyhd8ed1ab_0 < - dask-core=2022.11.1=pyhd8ed1ab_0 < - dask-labextension=6.0.0=pyhd8ed1ab_0 --- > - cytoolz=0.12.0=py39hb9d737c_1 > - dash=2.9.3=pyhd8ed1ab_2 > - dask=2023.5.1=pyhd8ed1ab_0 > - dask-core=2023.5.1=pyhd8ed1ab_0 > - dask-labextension=6.1.0=pyhd8ed1ab_0 113c112 < - datashader=0.14.3=pyh1a96a4e_0 --- > - datashader=0.14.4=pyh1a96a4e_0 115c114 < - dav1d=1.0.0=h166bdaf_1 --- > - dav1d=1.2.0=hd590300_0 117c116 < - debugpy=1.6.4=py38hfa26641_0 --- > - debugpy=1.6.7=py39h227be39_0 122c121 < - distarray=2.12.2=pyhd8ed1ab_2 --- > - distarray=2.12.2=pyh050c7b8_4 124c123 < - distributed=2022.11.1=pyhd8ed1ab_0 --- > - distributed=2023.5.1=pyhd8ed1ab_0 127,128c126,127 < - eccodes=2.27.0=h164a9dd_0 < - elfutils=0.186=he364ef2_0 --- > - eccodes=2.28.0=h7513371_1 > - elfutils=0.189=hde5d1a3_0 133,135c132,135 < - esmf=8.2.0=mpi_mpich_h5a1934d_102 < - esmpy=8.2.0=mpi_mpich_py38h9147699_101 < - exceptiongroup=1.0.4=pyhd8ed1ab_0 --- > - esmf=8.4.0=mpi_mpich_hc592774_104 > - esmpy=8.4.0=mpi_mpich_py39h3088dd8_102 > - exceptiongroup=1.1.1=pyhd8ed1ab_0 > - execnet=1.9.0=pyhd8ed1ab_0 137c137 < - expat=2.5.0=h27087fc_0 --- > - expat=2.5.0=hcb278e6_1 140,148c140,147 < - fftw=3.3.10=nompi_hf0379b8_105 < - filelock=3.8.0=pyhd8ed1ab_0 < - findlibs=0.0.2=pyhd8ed1ab_0 < - fiona=1.8.22=py38h85a5e0f_5 < - flask=2.2.2=pyhd8ed1ab_0 < - flask-compress=1.13=pyhd8ed1ab_0 < - flit-core=3.8.0=pyhd8ed1ab_0 < - flox=0.6.4=pyhd8ed1ab_0 < - folium=0.13.0=pyhd8ed1ab_0 --- > - fftw=3.3.10=nompi_hc118613_107 > - filelock=3.12.0=pyhd8ed1ab_0 > - findlibs=0.0.5=pyhd8ed1ab_0 > - fiona=1.9.1=py39hbc5ff6d_0 > - flask=2.3.2=pyhd8ed1ab_0 > - flit-core=3.9.0=pyhd8ed1ab_0 > - flox=0.7.2=pyhd8ed1ab_0 > - folium=0.14.0=pyhd8ed1ab_0 153c152 < - fontconfig=2.14.1=hc2a2eb6_0 --- > - fontconfig=2.14.2=h14ed4e7_0 156c155 < - fonttools=4.38.0=py38h0a891b7_1 --- > - fonttools=4.39.4=py39hd1e30aa_0 160,161c159,160 < - frozenlist=1.3.3=py38h0a891b7_0 < - fsspec=2022.11.0=pyhd8ed1ab_0 --- > - frozenlist=1.3.3=py39hb9d737c_0 > - fsspec=2023.5.0=pyh1a96a4e_0 163c162 < - future=0.18.2=pyhd8ed1ab_6 --- > - future=0.18.3=pyhd8ed1ab_0 165,167c164,166 < - gcsfs=2022.11.0=pyhd8ed1ab_0 < - gdal=3.6.0=py38h58634bd_13 < - geckodriver=0.32.0=h4b87306_0 --- > - gcsfs=2023.5.0=pyhd8ed1ab_0 > - gdal=3.6.2=py39hc6cd174_6 > - geckodriver=0.33.0=hd2f7af9_0 169,170c168,169 < - geopandas=0.12.1=pyhd8ed1ab_1 < - geopandas-base=0.12.1=pyha770c72_1 --- > - geopandas=0.13.0=pyhd8ed1ab_0 > - geopandas-base=0.13.0=pyha770c72_0 173,175c172,174 < - geotiff=1.7.1=ha76d385_4 < - geoviews=1.9.5=pyhd8ed1ab_0 < - geoviews-core=1.9.5=pyha770c72_0 --- > - geotiff=1.7.1=h7a142b4_6 > - geoviews=1.9.6=pyhd8ed1ab_0 > - geoviews-core=1.9.6=pyha770c72_0 178c177 < - giflib=5.2.1=h36c2ea0_2 --- > - giflib=5.2.1=h0b41bf4_3 180,182c179,181 < - gitpython=3.1.29=pyhd8ed1ab_0 < - glib=2.74.1=h6239696_1 < - glib-tools=2.74.1=h6239696_1 --- > - gitpython=3.1.31=pyhd8ed1ab_0 > - glib=2.76.3=hfc55251_0 > - glib-tools=2.76.3=hfc55251_0 185,187c184,186 < - google-api-core=2.10.2=pyhd8ed1ab_0 < - google-auth=2.14.1=pyh1a96a4e_0 < - google-auth-oauthlib=0.7.1=pyhd8ed1ab_0 --- > - google-api-core=2.11.0=pyhd8ed1ab_0 > - google-auth=2.19.0=pyh1a96a4e_0 > - google-auth-oauthlib=1.0.0=pyhd8ed1ab_0 189,198c188,197 < - google-cloud-storage=2.6.0=pyh1a96a4e_0 < - google-crc32c=1.1.2=py38h57c428a_4 < - google-resumable-media=2.4.0=pyhd8ed1ab_0 < - googleapis-common-protos=1.57.0=pyhd8ed1ab_3 < - greenlet=2.0.1=py38hfa26641_0 < - grpc-cpp=1.51.1=h27aab58_3 < - grpcio=1.51.1=py38h8dc9893_3 < - gst-plugins-base=1.21.2=h3e40eee_0 < - gstreamer=1.21.2=hd4edc92_0 < - gstreamer-orc=0.4.33=h166bdaf_0 --- > - google-cloud-storage=2.9.0=pyh1a96a4e_0 > - google-crc32c=1.1.2=py39h8db88ab_4 > - google-resumable-media=2.5.0=pyhd8ed1ab_0 > - googleapis-common-protos=1.57.1=pyhd8ed1ab_0 > - graphite2=1.3.13=h58526e2_1001 > - greenlet=2.0.2=py39h3d6467e_1 > - grpcio=1.54.2=py39h227be39_2 > - gst-plugins-base=1.22.0=h4243ec0_2 > - gstreamer=1.22.0=h25f0c4b_2 > - gstreamer-orc=0.4.34=hd590300_0 200,202c199,202 < - h5netcdf=1.1.0=pyhd8ed1ab_0 < - h5py=3.7.0=nompi_py38h7927eab_102 < - haversine=2.7.0=pyhd8ed1ab_0 --- > - h5netcdf=1.1.0=pyhd8ed1ab_1 > - h5py=3.8.0=mpi_mpich_py39hadaddcd_0 > - harfbuzz=6.0.0=h8e241bc_0 > - haversine=2.8.0=pyhd8ed1ab_0 205,207c205,206 < - heapdict=1.0.1=py_0 < - holoviews=1.15.2=pyhd8ed1ab_0 < - hvplot=0.8.2=pyhd8ed1ab_0 --- > - holoviews=1.16.0=pyhd8ed1ab_0 > - hvplot=0.8.3=pyhd8ed1ab_0 209c208 < - identify=2.5.9=pyhd8ed1ab_0 --- > - identify=2.5.24=pyhd8ed1ab_0 211,217c210,217 < - imagecodecs=2022.9.26=py38hf74bd01_4 < - imageio=2.22.4=pyhfa7a67d_1 < - importlib-metadata=5.1.0=pyha770c72_0 < - importlib_metadata=5.1.0=hd8ed1ab_0 < - importlib_resources=5.10.0=pyhd8ed1ab_0 < - iniconfig=1.1.1=pyh9f0ad1d_0 < - intake=0.6.6=pyhd8ed1ab_0 --- > - imagecodecs=2023.1.23=py39hd061359_0 > - 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pint=0.21=pyhd8ed1ab_0 > - pip=23.1.2=pyhd8ed1ab_0 447,448c453,454 < - platformdirs=2.5.2=pyhd8ed1ab_1 < - plotly=5.11.0=pyhd8ed1ab_0 --- > - platformdirs=3.5.1=pyhd8ed1ab_0 > - plotly=5.14.1=pyhd8ed1ab_0 451,453c457,459 < - pooch=1.6.0=pyhd8ed1ab_0 < - poppler=22.11.0=h92391eb_0 < - poppler-data=0.4.11=hd8ed1ab_0 --- > - pooch=1.7.0=pyha770c72_3 > - poppler=23.01.0=h091648b_0 > - poppler-data=0.4.12=hd8ed1ab_0 457,461c463,467 < - pre-commit=2.20.0=py38h578d9bd_1 < - proj=9.1.0=h93bde94_0 < - prometheus_client=0.15.0=pyhd8ed1ab_0 < - prompt-toolkit=3.0.33=pyha770c72_0 < - prompt_toolkit=3.0.33=hd8ed1ab_0 --- > - pre-commit=3.3.2=pyha770c72_0 > - proj=9.1.1=h8ffa02c_2 > - prometheus_client=0.17.0=pyhd8ed1ab_0 > - prompt-toolkit=3.0.38=pyha770c72_0 > - prompt_toolkit=3.0.38=hd8ed1ab_0 463c469 < - protobuf=4.21.12=py38h8dc9893_0 --- > - protobuf=4.21.12=py39h227be39_0 465c471 < - psutil=5.9.4=py38h0a891b7_0 --- > - psutil=5.9.5=py39h72bdee0_0 468c474,476 < - pulseaudio=16.1=h126f2b6_0 --- > - pulseaudio=16.1=hcb278e6_3 > - pulseaudio-client=16.1=h5195f5e_3 > - pulseaudio-daemon=16.1=ha8d29e2_3 470c478 < - pyarrow=11.0.0=py38hf05218d_9_cpu --- > - pyarrow=10.0.1=py39he4327e9_25_cpu 476,478c484,486 < - pycurl=7.45.1=py38he9e1d38_3 < - pydantic=1.10.2=py38h0a891b7_1 < - pydap=3.3.0=pyhd8ed1ab_0 --- > - pycurl=7.45.1=py39h9297c8b_3 > - pydantic=1.10.8=py39hd1e30aa_0 > - pydap=3.4.0=pyhd8ed1ab_0 480,482c488,491 < - pygeos=0.13=py38hafd38ec_2 < - pygments=2.13.0=pyhd8ed1ab_0 < - pyjwt=2.6.0=pyhd8ed1ab_0 --- > - pygeos=0.14=py39hc9151fd_0 > - pygments=2.15.1=pyhd8ed1ab_0 > - pyjwt=2.7.0=pyhd8ed1ab_0 > - pymbolic=2022.2=pyhd8ed1ab_0 485c494,495 < - pynacl=1.5.0=py38h0a891b7_2 --- > - pynacl=1.5.0=py39hb9d737c_2 > - pyogrio=0.5.1=py39hbc5ff6d_0 488,491c498,501 < - pyproj=3.4.0=py38hce0a2d1_2 < - pyqt=5.15.7=py38h7492b6b_2 < - pyqt5-sip=12.11.0=py38hfa26641_2 < - pyrsistent=0.19.2=py38h0a891b7_0 --- > - pyproj=3.5.0=py39hf8a5840_0 > - pyqt=5.15.7=py39h5c7b992_3 > - pyqt5-sip=12.11.0=py39h227be39_3 > - pyrsistent=0.19.3=py39h72bdee0_0 494,497c504,506 < - pyston_lite=2.3.4=py38h0a891b7_1 < - pyston_lite_autoload=2.3.4=pyh44b312d_1 < - pytest=7.2.0=pyhd8ed1ab_2 < - python=3.8.16=he550d4f_1_cpython --- > - pytest=7.3.1=pyhd8ed1ab_0 > - pytest-xdist=3.3.1=pyhd8ed1ab_0 > - python=3.9.16=h2782a2a_0_cpython 499,501c508,510 < - python-eccodes=1.4.2=py38h26c90d9_1 < - python-fastjsonschema=2.16.2=pyhd8ed1ab_0 < - python-json-logger=2.0.1=pyh9f0ad1d_0 --- > - python-eccodes=1.5.1=py39h389d5f1_0 > - python-fastjsonschema=2.17.1=pyhd8ed1ab_0 > - python-json-logger=2.0.7=pyhd8ed1ab_0 503,506c512,515 < - python-tzdata=2022.7=pyhd8ed1ab_0 < - python_abi=3.8=3_cp38 < - pytz=2022.6=pyhd8ed1ab_0 < - pytz-deprecation-shim=0.1.0.post0=py38h578d9bd_3 --- > - python-tzdata=2023.3=pyhd8ed1ab_0 > - python_abi=3.9=3_cp39 > - pytools=2022.1.14=pyhd8ed1ab_0 > - pytz=2023.3=pyhd8ed1ab_0 508,521c517,530 < - pyviz_comms=2.2.1=pyhd8ed1ab_1 < - pywavelets=1.3.0=py38h26c90d9_2 < - pyyaml=6.0=py38h0a891b7_5 < - pyzmq=24.0.1=py38hfc09fa9_1 < - qhull=2020.2=h4bd325d_2 < - qt-main=5.15.6=hf6cd601_5 < - qtconsole=5.4.0=pyhd8ed1ab_0 < - qtconsole-base=5.4.0=pyha770c72_0 < - qtpy=2.3.0=pyhd8ed1ab_0 < - rasterio=1.3.4=py38h485b76c_0 < - raven-hydro=3.0.4.322=ha46ed4c_2 < - ravenpy=0.9.0=pyha21a80b_0 < - re2=2023.02.02=hcb278e6_0 < - readline=8.1.2=h0f457ee_0 --- > - pyviz_comms=2.3.0=pyhd8ed1ab_0 > - pywavelets=1.4.1=py39h389d5f1_0 > - pyyaml=6.0=py39hb9d737c_5 > - pyzmq=25.0.2=py39h0be026e_0 > - qt-main=5.15.8=h5d23da1_6 > - qtconsole=5.4.3=pyhd8ed1ab_0 > - qtconsole-base=5.4.3=pyha770c72_0 > - qtpy=2.3.1=pyhd8ed1ab_0 > - rasterio=1.3.6=py39h09b1985_0 > - raven-hydro=0.2.1=py39h8e2dbb5_1 > - ravenpy=0.12.0=py39hf3d152e_2 > - rdma-core=28.9=h59595ed_1 > - re2=2023.03.02=h8c504da_0 > - readline=8.2=h8228510_1 523c532 < - requests=2.28.1=pyhd8ed1ab_1 --- > - requests=2.31.0=pyhd8ed1ab_0 528,530c537,540 < - rich=12.6.0=pyhd8ed1ab_0 < - rioxarray=0.13.1=pyhd8ed1ab_0 < - roocs-utils=0.6.3=pyh1a96a4e_0 --- > - rfc3339-validator=0.1.4=pyhd8ed1ab_0 > - rfc3986-validator=0.1.1=pyh9f0ad1d_0 > - rioxarray=0.14.1=pyhd8ed1ab_0 > - roocs-utils=0.6.4=pyh1a96a4e_0 532,548c542,560 < - rtree=1.0.1=py38h02d302b_1 < - ruamel.yaml=0.17.21=py38h0a891b7_2 < - ruamel.yaml.clib=0.2.7=py38h0a891b7_0 < - s2n=1.3.41=h3358134_0 < - s3fs=2022.11.0=pyhd8ed1ab_0 < - s3transfer=0.6.0=pyhd8ed1ab_0 < - scikit-image=0.19.3=py38h8f669ce_2 < - scikit-learn=1.1.3=py38h4c4ba11_1 < - scipy=1.8.1=py38h8ce737c_3 < - scp=0.14.4=pyhd8ed1ab_0 < - selenium=4.6.0=pyhd8ed1ab_0 < - semver=2.13.0=pyh9f0ad1d_0 < - send2trash=1.8.0=pyhd8ed1ab_0 < - setuptools=59.8.0=py38h578d9bd_1 < - shapely=1.8.5=py38hafd38ec_2 < - simpervisor=0.4=pyhd8ed1ab_0 < - sip=6.7.5=py38hfa26641_0 --- > - rtree=1.0.1=py39hb102c33_1 > - ruamel.yaml=0.17.30=py39hd1e30aa_0 > - ruamel.yaml.clib=0.2.7=py39h72bdee0_1 > - s2n=1.3.44=h06160fa_0 > - s3fs=2023.5.0=pyhd8ed1ab_0 > - s3transfer=0.6.1=pyhd8ed1ab_0 > - scikit-image=0.20.0=py39h7c7b5a8_1 > - scikit-learn=1.2.2=py39hc236052_2 > - scipy=1.9.1=py39h8ba3f38_0 > - scp=0.14.5=pyhd8ed1ab_0 > - seaborn=0.12.2=hd8ed1ab_0 > - seaborn-base=0.12.2=pyhd8ed1ab_0 > - selenium=4.9.1=pyhd8ed1ab_0 > - semver=3.0.0=pyhd8ed1ab_0 > - send2trash=1.8.2=pyh41d4057_0 > - setuptools=59.8.0=py39hf3d152e_1 > - shapely=2.0.1=py39hc9151fd_0 > - simpervisor=1.0.0=pyhd8ed1ab_0 > - sip=6.7.9=py39h3d6467e_0 552c564 < - snappy=1.1.9=hbd366e4_2 --- > - snappy=1.1.10=h9fff704_0 557,560c569,572 < - sparse=0.13.0=pyhd8ed1ab_0 < - spotpy=1.6.1=pyhd8ed1ab_0 < - sqlalchemy=1.4.44=py38h0a891b7_0 < - sqlite=3.40.0=h4ff8645_0 --- > - sparse=0.14.0=pyhd8ed1ab_0 > - spotpy=1.6.2=pyhd8ed1ab_0 > - sqlalchemy=2.0.15=py39hd1e30aa_0 > - sqlite=3.42.0=h2c6b66d_0 562c574 < - statsmodels=0.13.5=py38h26c90d9_2 --- > - statsmodels=0.14.0=py39h0f8d45d_1 565,566c577,578 < - tenacity=8.1.0=pyhd8ed1ab_0 < - terminado=0.17.0=pyh41d4057_0 --- > - tenacity=8.2.2=pyhd8ed1ab_0 > - terminado=0.17.1=pyh41d4057_0 569c581 < - tifffile=2022.10.10=pyhd8ed1ab_0 --- > - tifffile=2023.4.12=pyhd8ed1ab_0 576,578c588,590 < - tornado=6.1=py38h0a891b7_3 < - tqdm=4.64.1=pyhd8ed1ab_0 < - traitlets=5.6.0=pyhd8ed1ab_0 --- > - tornado=6.3.2=py39hd1e30aa_0 > - tqdm=4.65.0=pyhd8ed1ab_1 > - traitlets=5.9.0=pyhd8ed1ab_0 580,589c592,602 < - trio=0.21.0=py38h578d9bd_0 < - trio-websocket=0.9.2=pyhd8ed1ab_0 < - typing-extensions=4.4.0=hd8ed1ab_0 < - typing_extensions=4.4.0=pyha770c72_0 < - tzcode=2022g=h166bdaf_0 < - tzdata=2022g=h191b570_0 < - tzlocal=4.2=py38h578d9bd_2 < - ujson=5.7.0=py38h8dc9893_0 < - ukkonen=1.0.1=py38h43d8883_3 < - unicodedata2=15.0.0=py38h0a891b7_0 --- > - trio=0.22.0=py39hf3d152e_1 > - trio-websocket=0.10.2=pyhd8ed1ab_0 > - typing-extensions=4.6.2=hd8ed1ab_0 > - typing_extensions=4.6.2=pyha770c72_0 > - tzcode=2023c=h0b41bf4_0 > - tzdata=2023c=h71feb2d_0 > - tzlocal=5.0.1=py39hf3d152e_0 > - ucx=1.14.1=hf587318_1 > - ujson=5.7.0=py39h227be39_0 > - ukkonen=1.0.1=py39hf939315_3 > - unicodedata2=15.0.0=py39hb9d737c_0 591c604 < - urllib3=1.26.13=pyhd8ed1ab_0 --- > - urllib3=1.26.15=pyhd8ed1ab_0 593,594c606,607 < - validators=0.18.2=pyhd3deb0d_0 < - virtualenv=20.17.0=py38h578d9bd_0 --- > - validators=0.20.0=pyhd8ed1ab_0 > - virtualenv=20.23.0=pyhd8ed1ab_0 596,597c609,610 < - watchdog=2.1.9=py38h578d9bd_1 < - wcwidth=0.2.5=pyh9f0ad1d_2 --- > - watchdog=3.0.0=py39hf3d152e_0 > - wcwidth=0.2.6=pyhd8ed1ab_0 600,602c613,615 < - websocket-client=1.4.2=pyhd8ed1ab_0 < - websockets=10.4=py38h0a891b7_1 < - werkzeug=2.2.2=pyhd8ed1ab_0 --- > - websocket-client=1.5.2=pyhd8ed1ab_0 > - websockets=11.0.3=py39hd1e30aa_0 > - werkzeug=2.3.4=pyhd8ed1ab_0 604,606c617,619 < - wheel=0.38.4=pyhd8ed1ab_0 < - widgetsnbextension=4.0.3=pyhd8ed1ab_0 < - wrapt=1.14.1=py38h0a891b7_1 --- > - wheel=0.40.0=pyhd8ed1ab_0 > - widgetsnbextension=4.0.7=pyhd8ed1ab_0 > - wrapt=1.15.0=py39h72bdee0_0 608c621 < - xarray=2022.10.0=pyhd8ed1ab_0 --- > - xarray=2023.1.0=pyhd8ed1ab_0 614c627 < - xclim=0.39.0=pyhd8ed1ab_0 --- > - xclim=0.43.0=py39hf3d152e_1 616c629 < - xesmf=0.6.3=pyhd8ed1ab_1 --- > - xesmf=0.7.1=pyhd8ed1ab_0 618c631 < - xeus-python=0.15.8=py38hfbd4bf9_1 --- > - xeus-python=0.15.9=py39h7633fee_0 621c634 < - xeus-zmq=1.0.2=h0541b36_2 --- > - xeus-zmq=1.0.3=h0541b36_0 622a636 > - xkeyboard-config=2.38=h0b41bf4_0 624c638 < - xlsxwriter=3.0.3=pyhd8ed1ab_0 --- > - xlsxwriter=3.1.2=pyhd8ed1ab_0 630,633c644,647 < - xorg-libice=1.0.10=h7f98852_0 < - xorg-libsm=1.2.3=hd9c2040_1000 < - xorg-libx11=1.7.2=h7f98852_0 < - xorg-libxau=1.0.9=h7f98852_0 --- > - xorg-libice=1.1.1=hd590300_0 > - xorg-libsm=1.2.4=h7391055_0 > - xorg-libx11=1.8.4=h0b41bf4_0 > - xorg-libxau=1.0.11=hd590300_0 636c650 < - xorg-libxext=1.3.4=h7f98852_1 --- > - xorg-libxext=1.3.4=h0b41bf4_2 644c658 < - xorg-xextproto=7.3.0=h7f98852_1002 --- > - xorg-xextproto=7.3.0=h0b41bf4_1003 647c661 < - xrft=1.0.0=pyhd8ed1ab_0 --- > - xrft=1.0.1=pyhd8ed1ab_0 649c663 < - xyzservices=2022.9.0=pyhd8ed1ab_0 --- > - xyzservices=2023.5.0=pyhd8ed1ab_1 650a665 > - y-py=0.5.9=py39h50f1755_0 652,653c667,669 < - yarl=1.8.1=py38h0a891b7_0 < - zarr=2.13.3=pyhd8ed1ab_0 --- > - yarl=1.9.2=py39hd1e30aa_0 > - ypy-websocket=0.8.2=pyhd8ed1ab_0 > - zarr=2.14.2=pyhd8ed1ab_0 656,657c672,673 < - zict=2.2.0=pyhd8ed1ab_0 < - zipp=3.11.0=pyhd8ed1ab_0 --- > - zict=3.0.0=pyhd8ed1ab_0 > - zipp=3.15.0=pyhd8ed1ab_0 659,660c675,676 < - zlib-ng=2.0.6=h166bdaf_0 < - zstd=1.5.2=h6239696_4 --- > - zlib-ng=2.0.7=h0b41bf4_0 > - zstd=1.5.2=h3eb15da_6 662,673c678,701 < - astunparse==1.6.3 < - colour==0.1.5 < - geojson==2.5.0 < - ipython-blocking==0.3.1 < - jupyterlab-logout==0.5.0 < - jupyterlab-tabular-data-editor==1.0.0 < - jupyternotify==0.1.15 < - pixiedust==1.1.19 < - pytest-tornasync==0.6.0.post2 < - xmltodict==0.13.0 < - xncml==0.2 < - xsdata==22.12 --- > - arrow==1.2.3 > - astunparse==1.6.3 > - colour==0.1.5 > - dnspython==2.3.0 > - email-validator==2.0.0.post2 > - fqdn==1.5.1 > - geojson==3.0.1 > - hsclient==0.3.3 > - hsmodels==0.5.5 > - ipython-blocking==0.3.1 > - isodate==0.6.1 > - isoduration==20.11.0 > - jsonpointer==2.3 > - jupyterlab-logout==0.5.0 > - jupyterlab-tabular-data-editor==1.0.0 > - jupyternotify==0.1.15 > - pixiedust==1.1.19 > - pytest-tornasync==0.6.0.post2 > - rdflib==5.0.0 > - uri-template==1.2.0 > - webcolors==1.13 > - xmltodict==0.13.0 > - xncml==0.2 > - xsdata==23.5 ``` Full new conda env export: [230530-1-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621130/230530-1-conda-env-export.yml.txt) ``` name: birdy channels: - cdat - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=2_gnu - affine=2.4.0=pyhd8ed1ab_0 - aiobotocore=2.5.0=pyhd8ed1ab_0 - aiofiles=22.1.0=pyhd8ed1ab_0 - aiohttp=3.8.4=py39h72bdee0_0 - aioitertools=0.11.0=pyhd8ed1ab_0 - aiosignal=1.3.1=pyhd8ed1ab_0 - aiosqlite=0.19.0=pyhd8ed1ab_0 - alembic=1.11.1=pyhd8ed1ab_0 - alsa-lib=1.2.8=h166bdaf_0 - altair=5.0.1=pyhd8ed1ab_0 - ansi2html=1.8.0=py39hf3d152e_1 - anyio=3.6.1=pyhd8ed1ab_1 - aom=3.5.0=h27087fc_0 - appdirs=1.4.4=pyh9f0ad1d_0 - argon2-cffi=21.3.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py39hb9d737c_3 - asciitree=0.3.3=py_2 - astor=0.8.1=pyh9f0ad1d_0 - asttokens=2.2.1=pyhd8ed1ab_0 - async-timeout=4.0.2=pyhd8ed1ab_0 - async_generator=1.10=py_0 - attr=2.5.1=h166bdaf_1 - attrs=23.1.0=pyh71513ae_1 - aws-c-auth=0.6.27=he072965_1 - aws-c-cal=0.5.26=hf677bf3_1 - aws-c-common=0.8.19=hd590300_0 - aws-c-compression=0.2.16=hbad4bc6_7 - aws-c-event-stream=0.2.20=hb4b372c_7 - aws-c-http=0.7.7=h2632f9a_4 - aws-c-io=0.13.21=h9fef7b8_5 - aws-c-mqtt=0.8.11=h2282364_1 - aws-c-s3=0.3.0=hcb5a9b2_2 - aws-c-sdkutils=0.1.9=hbad4bc6_2 - aws-checksums=0.1.14=hbad4bc6_7 - aws-crt-cpp=0.20.2=he0fdcb3_0 - aws-sdk-cpp=1.10.57=h059227d_13 - babel=2.12.1=pyhd8ed1ab_1 - backcall=0.2.0=pyh9f0ad1d_0 - backports=1.0=pyhd8ed1ab_3 - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0 - base58=2.1.1=pyhd8ed1ab_0 - bcrypt=3.2.2=py39hb9d737c_1 - beautifulsoup4=4.12.2=pyha770c72_0 - bias_correction=0.4=pyhd8ed1ab_0 - birdy=0.8.4=pyh1a96a4e_0 - bleach=6.0.0=pyhd8ed1ab_0 - blinker=1.6.2=pyhd8ed1ab_0 - blosc=1.21.4=h0f2a231_0 - bokeh=2.4.3=pyhd8ed1ab_3 - boltons=23.0.0=pyhd8ed1ab_0 - boost-cpp=1.78.0=h5adbc97_2 - boto3=1.26.76=pyhd8ed1ab_0 - botocore=1.29.76=pyhd8ed1ab_0 - bottleneck=1.3.7=py39h389d5f1_0 - branca=0.6.0=pyhd8ed1ab_0 - brotli=1.0.9=h166bdaf_8 - brotli-bin=1.0.9=h166bdaf_8 - brotlipy=0.7.0=py39hb9d737c_1005 - brunsli=0.1=h9c3ff4c_0 - bzip2=1.0.8=h7f98852_4 - c-ares=1.19.1=hd590300_0 - c-blosc2=2.9.2=hb4ffafa_0 - ca-certificates=2023.5.7=hbcca054_0 - cached-property=1.5.2=hd8ed1ab_1 - cached_property=1.5.2=pyha770c72_1 - cachetools=5.3.0=pyhd8ed1ab_0 - cairo=1.16.0=ha61ee94_1014 - cartopy=0.21.1=py39h6e7ad6e_0 - cattrs=22.2.0=pyhd8ed1ab_0 - cdat_info=8.2.1=pyhd8ed1ab_2 - cdms2=3.1.5=py39h36de48d_15 - cdtime=3.1.4=py39he83c29a_7 - certifi=2023.5.7=pyhd8ed1ab_0 - certipy=0.1.3=py_0 - cf_xarray=0.8.0=pyhd8ed1ab_0 - cffi=1.15.1=py39he91dace_3 - cfgrib=0.9.10.4=pyhd8ed1ab_0 - cfgv=3.3.1=pyhd8ed1ab_0 - cfitsio=4.2.0=hd9d235c_0 - cftime=1.6.2=py39h2ae25f5_1 - charls=2.4.2=h59595ed_0 - charset-normalizer=2.1.1=pyhd8ed1ab_0 - click=8.1.3=unix_pyhd8ed1ab_2 - click-plugins=1.1.1=py_0 - 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pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0 - platformdirs=3.5.1=pyhd8ed1ab_0 - plotly=5.14.1=pyhd8ed1ab_0 - pluggy=1.0.0=pyhd8ed1ab_5 - ply=3.11=py_1 - pooch=1.7.0=pyha770c72_3 - poppler=23.01.0=h091648b_0 - poppler-data=0.4.12=hd8ed1ab_0 - postgresql=15.2=h3248436_0 - pox=0.3.2=pyhd8ed1ab_0 - ppft=1.7.6.6=pyhd8ed1ab_0 - pre-commit=3.3.2=pyha770c72_0 - proj=9.1.1=h8ffa02c_2 - prometheus_client=0.17.0=pyhd8ed1ab_0 - prompt-toolkit=3.0.38=pyha770c72_0 - prompt_toolkit=3.0.38=hd8ed1ab_0 - properscoring=0.1=py_0 - protobuf=4.21.12=py39h227be39_0 - pscript=0.7.7=pyhd8ed1ab_0 - psutil=5.9.5=py39h72bdee0_0 - pthread-stubs=0.4=h36c2ea0_1001 - ptyprocess=0.7.0=pyhd3deb0d_0 - pulseaudio=16.1=hcb278e6_3 - pulseaudio-client=16.1=h5195f5e_3 - pulseaudio-daemon=16.1=ha8d29e2_3 - pure_eval=0.2.2=pyhd8ed1ab_0 - pyarrow=10.0.1=py39he4327e9_25_cpu - pyasn1=0.4.8=py_0 - pyasn1-modules=0.2.7=py_0 - pycparser=2.21=pyhd8ed1ab_0 - pyct=0.4.6=py_0 - pyct-core=0.4.6=py_0 - pycurl=7.45.1=py39h9297c8b_3 - pydantic=1.10.8=py39hd1e30aa_0 - pydap=3.4.0=pyhd8ed1ab_0 - pydeck=0.8.0=pyhd8ed1ab_0 - pygeos=0.14=py39hc9151fd_0 - pygments=2.15.1=pyhd8ed1ab_0 - pyjwt=2.7.0=pyhd8ed1ab_0 - pymbolic=2022.2=pyhd8ed1ab_0 - pymetalink=6.4=pyhd8ed1ab_0 - pympler=1.0.1=pyhd8ed1ab_0 - pynacl=1.5.0=py39hb9d737c_2 - pyogrio=0.5.1=py39hbc5ff6d_0 - pyopenssl=23.1.1=pyhd8ed1ab_0 - pyparsing=3.0.9=pyhd8ed1ab_0 - pyproj=3.5.0=py39hf8a5840_0 - pyqt=5.15.7=py39h5c7b992_3 - pyqt5-sip=12.11.0=py39h227be39_3 - pyrsistent=0.19.3=py39h72bdee0_0 - pyshp=2.3.1=pyhd8ed1ab_0 - pysocks=1.7.1=pyha2e5f31_6 - pytest=7.3.1=pyhd8ed1ab_0 - pytest-xdist=3.3.1=pyhd8ed1ab_0 - python=3.9.16=h2782a2a_0_cpython - python-dateutil=2.8.2=pyhd8ed1ab_0 - python-eccodes=1.5.1=py39h389d5f1_0 - python-fastjsonschema=2.17.1=pyhd8ed1ab_0 - python-json-logger=2.0.7=pyhd8ed1ab_0 - python-pptx=0.6.21=pyhd8ed1ab_0 - python-tzdata=2023.3=pyhd8ed1ab_0 - python_abi=3.9=3_cp39 - pytools=2022.1.14=pyhd8ed1ab_0 - pytz=2023.3=pyhd8ed1ab_0 - pyu2f=0.1.5=pyhd8ed1ab_0 - pyviz_comms=2.3.0=pyhd8ed1ab_0 - pywavelets=1.4.1=py39h389d5f1_0 - pyyaml=6.0=py39hb9d737c_5 - pyzmq=25.0.2=py39h0be026e_0 - qt-main=5.15.8=h5d23da1_6 - qtconsole=5.4.3=pyhd8ed1ab_0 - qtconsole-base=5.4.3=pyha770c72_0 - qtpy=2.3.1=pyhd8ed1ab_0 - rasterio=1.3.6=py39h09b1985_0 - raven-hydro=0.2.1=py39h8e2dbb5_1 - ravenpy=0.12.0=py39hf3d152e_2 - rdma-core=28.9=h59595ed_1 - re2=2023.03.02=h8c504da_0 - readline=8.2=h8228510_1 - regionmask=0.9.0=pyhd8ed1ab_0 - requests=2.31.0=pyhd8ed1ab_0 - requests-cache=1.0.1=pyhd8ed1ab_0 - requests-magpie=0.2.0=pyhd8ed1ab_0 - requests-oauthlib=1.3.1=pyhd8ed1ab_0 - retrying=1.3.3=py_2 - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - rfc3986-validator=0.1.1=pyh9f0ad1d_0 - rioxarray=0.14.1=pyhd8ed1ab_0 - roocs-utils=0.6.4=pyh1a96a4e_0 - rsa=4.9=pyhd8ed1ab_0 - rtree=1.0.1=py39hb102c33_1 - ruamel.yaml=0.17.30=py39hd1e30aa_0 - ruamel.yaml.clib=0.2.7=py39h72bdee0_1 - s2n=1.3.44=h06160fa_0 - s3fs=2023.5.0=pyhd8ed1ab_0 - s3transfer=0.6.1=pyhd8ed1ab_0 - scikit-image=0.20.0=py39h7c7b5a8_1 - scikit-learn=1.2.2=py39hc236052_2 - scipy=1.9.1=py39h8ba3f38_0 - scp=0.14.5=pyhd8ed1ab_0 - seaborn=0.12.2=hd8ed1ab_0 - seaborn-base=0.12.2=pyhd8ed1ab_0 - selenium=4.9.1=pyhd8ed1ab_0 - semver=3.0.0=pyhd8ed1ab_0 - send2trash=1.8.2=pyh41d4057_0 - setuptools=59.8.0=py39hf3d152e_1 - shapely=2.0.1=py39hc9151fd_0 - simpervisor=1.0.0=pyhd8ed1ab_0 - sip=6.7.9=py39h3d6467e_0 - siphon=0.9=pyhd8ed1ab_2 - six=1.16.0=pyh6c4a22f_0 - smmap=3.0.5=pyh44b312d_0 - snappy=1.1.10=h9fff704_0 - sniffio=1.3.0=pyhd8ed1ab_0 - snuggs=1.4.7=py_0 - sortedcontainers=2.4.0=pyhd8ed1ab_0 - soupsieve=2.3.2.post1=pyhd8ed1ab_0 - sparse=0.14.0=pyhd8ed1ab_0 - spotpy=1.6.2=pyhd8ed1ab_0 - sqlalchemy=2.0.15=py39hd1e30aa_0 - sqlite=3.42.0=h2c6b66d_0 - stack_data=0.6.2=pyhd8ed1ab_0 - statsmodels=0.14.0=py39h0f8d45d_1 - streamlit=1.8.0=pyhd8ed1ab_0 - tblib=1.7.0=pyhd8ed1ab_0 - tenacity=8.2.2=pyhd8ed1ab_0 - terminado=0.17.1=pyh41d4057_0 - threadpoolctl=3.1.0=pyh8a188c0_0 - threddsclient=0.4.2=py_0 - tifffile=2023.4.12=pyhd8ed1ab_0 - tiledb=2.13.2=hd532e3d_0 - tinycss2=1.2.1=pyhd8ed1ab_0 - tk=8.6.12=h27826a3_0 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.0=pyhd8ed1ab_0 - tornado=6.3.2=py39hd1e30aa_0 - tqdm=4.65.0=pyhd8ed1ab_1 - traitlets=5.9.0=pyhd8ed1ab_0 - traittypes=0.2.1=pyh9f0ad1d_2 - trio=0.22.0=py39hf3d152e_1 - trio-websocket=0.10.2=pyhd8ed1ab_0 - typing-extensions=4.6.2=hd8ed1ab_0 - typing_extensions=4.6.2=pyha770c72_0 - tzcode=2023c=h0b41bf4_0 - tzdata=2023c=h71feb2d_0 - tzlocal=5.0.1=py39hf3d152e_0 - ucx=1.14.1=hf587318_1 - ujson=5.7.0=py39h227be39_0 - ukkonen=1.0.1=py39hf939315_3 - unicodedata2=15.0.0=py39hb9d737c_0 - url-normalize=1.4.3=pyhd8ed1ab_0 - urllib3=1.26.15=pyhd8ed1ab_0 - urlpath=1.2.0=pyhd8ed1ab_0 - validators=0.20.0=pyhd8ed1ab_0 - virtualenv=20.23.0=pyhd8ed1ab_0 - voila=0.4.0=pyhd8ed1ab_0 - watchdog=3.0.0=py39hf3d152e_0 - wcwidth=0.2.6=pyhd8ed1ab_0 - webencodings=0.5.1=py_1 - webob=1.8.7=pyhd8ed1ab_0 - websocket-client=1.5.2=pyhd8ed1ab_0 - websockets=11.0.3=py39hd1e30aa_0 - werkzeug=2.3.4=pyhd8ed1ab_0 - wget=1.20.3=ha35d2d1_1 - wheel=0.40.0=pyhd8ed1ab_0 - widgetsnbextension=4.0.7=pyhd8ed1ab_0 - wrapt=1.15.0=py39h72bdee0_0 - wsproto=1.2.0=pyhd8ed1ab_0 - xarray=2023.1.0=pyhd8ed1ab_0 - xcb-util=0.4.0=h516909a_0 - xcb-util-image=0.4.0=h166bdaf_0 - xcb-util-keysyms=0.4.0=h516909a_0 - xcb-util-renderutil=0.3.9=h166bdaf_0 - xcb-util-wm=0.4.1=h516909a_0 - xclim=0.43.0=py39hf3d152e_1 - xerces-c=3.2.4=h55805fa_1 - xesmf=0.7.1=pyhd8ed1ab_0 - xeus=3.0.5=hac2b420_1 - xeus-python=0.15.9=py39h7633fee_0 - xeus-python-shell=0.5.0=pyhd8ed1ab_0 - xeus-python-shell-raw=0.5.0=pyhd8ed1ab_0 - xeus-zmq=1.0.3=h0541b36_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.38=h0b41bf4_0 - xlrd=2.0.1=pyhd8ed1ab_3 - xlsxwriter=3.1.2=pyhd8ed1ab_0 - xorg-damageproto=1.2.1=h7f98852_1002 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-glproto=1.4.17=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.4=h0b41bf4_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdamage=1.1.5=h7f98852_1 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrandr=1.5.2=h7f98852_1 - xorg-libxrender=0.9.10=h7f98852_1003 - xorg-randrproto=1.5.0=h7f98852_1001 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-util-macros=1.19.3=h7f98852_0 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xrft=1.0.1=pyhd8ed1ab_0 - xskillscore=0.0.24=pyhd8ed1ab_0 - xyzservices=2023.5.0=pyhd8ed1ab_1 - xz=5.2.6=h166bdaf_0 - y-py=0.5.9=py39h50f1755_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.2=py39hd1e30aa_0 - ypy-websocket=0.8.2=pyhd8ed1ab_0 - zarr=2.14.2=pyhd8ed1ab_0 - zeromq=4.3.4=h9c3ff4c_1 - zfp=1.0.0=h27087fc_3 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.15.0=pyhd8ed1ab_0 - zlib=1.2.13=h166bdaf_4 - zlib-ng=2.0.7=h0b41bf4_0 - zstd=1.5.2=h3eb15da_6 - pip: - arrow==1.2.3 - astunparse==1.6.3 - colour==0.1.5 - dnspython==2.3.0 - email-validator==2.0.0.post2 - fqdn==1.5.1 - geojson==3.0.1 - hsclient==0.3.3 - hsmodels==0.5.5 - ipython-blocking==0.3.1 - isodate==0.6.1 - isoduration==20.11.0 - jsonpointer==2.3 - jupyterlab-logout==0.5.0 - jupyterlab-tabular-data-editor==1.0.0 - jupyternotify==0.1.15 - pixiedust==1.1.19 - pytest-tornasync==0.6.0.post2 - rdflib==5.0.0 - uri-template==1.2.0 - webcolors==1.13 - xmltodict==0.13.0 - xncml==0.2 - xsdata==23.5 prefix: /opt/conda/envs/birdy ``` Docker build log [230530-1-buildlogs.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/11621136/230530-1-buildlogs.txt) ``` Sending build context to Docker daemon 22.02kB Step 1/18 : FROM continuumio/miniconda3 ---> fbedfde8d058 Step 2/18 : RUN conda update conda -n base && conda install mamba -n base -c conda-forge -c defaults && conda clean --all --yes && conda config --set channel_priority strict && wget -qO- https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -C /usr/local -xvj bin/micromamba ---> Using cache ---> 418cc0c03798 Step 3/18 : ENV MAMBA_ROOT_PREFIX="/opt/conda" ---> Using cache ---> cf727f7e31d9 Step 4/18 : RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y git mercurial gcc unzip patch fonts-humor-sans firefox-esr x11-utils && apt-get clean ---> Using cache ---> c1929f372dc2 Step 5/18 : RUN groupadd --gid 1000 jenkins && useradd --uid 1000 --gid jenkins --create-home jenkins && chmod -R a+rwX /opt/conda ---> Using cache ---> 85378190e665 Step 6/18 : COPY environment.yml /environment.yml ---> c06bfdb4ac56 Step 7/18 : RUN umask 0000 && mamba create --name birdy --channel conda-forge --channel defaults xclim ravenpy python=3.9 --yes && mamba env update --name birdy --file /environment.yml && mamba clean --all --yes ---> Running in 95270a0111d6 Transaction Prefix: /opt/conda/envs/birdy Updating specs: - xclim - ravenpy - python=3.9 Package Version Build Channel Size ────────────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ────────────────────────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 3kB + _openmp_mutex 4.5 2_gnu conda-forge/linux-64 24kB + affine 2.4.0 pyhd8ed1ab_0 conda-forge/noarch 19kB + appdirs 1.4.4 pyh9f0ad1d_0 conda-forge/noarch 13kB + asttokens 2.2.1 pyhd8ed1ab_0 conda-forge/noarch 28kB + attrs 23.1.0 pyh71513ae_1 conda-forge/noarch 55kB + aws-c-auth 0.6.27 he072965_1 conda-forge/linux-64 102kB + aws-c-cal 0.5.26 hf677bf3_1 conda-forge/linux-64 50kB + aws-c-common 0.8.19 hd590300_0 conda-forge/linux-64 196kB + aws-c-compression 0.2.16 hbad4bc6_7 conda-forge/linux-64 19kB + aws-c-event-stream 0.2.20 hb4b372c_7 conda-forge/linux-64 54kB + aws-c-http 0.7.7 h2632f9a_4 conda-forge/linux-64 192kB + aws-c-io 0.13.21 h9fef7b8_5 conda-forge/linux-64 140kB + aws-c-mqtt 0.8.11 h2282364_1 conda-forge/linux-64 148kB + aws-c-s3 0.3.0 hcb5a9b2_2 conda-forge/linux-64 76kB + aws-c-sdkutils 0.1.9 hbad4bc6_2 conda-forge/linux-64 54kB + aws-checksums 0.1.14 hbad4bc6_7 conda-forge/linux-64 50kB + aws-crt-cpp 0.20.2 he0fdcb3_0 conda-forge/linux-64 319kB + aws-sdk-cpp 1.10.57 h059227d_13 conda-forge/linux-64 4MB + backcall 0.2.0 pyh9f0ad1d_0 conda-forge/noarch 14kB + backports 1.0 pyhd8ed1ab_3 conda-forge/noarch 6kB + backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge/noarch 9kB + bias_correction 0.4 pyhd8ed1ab_0 conda-forge/noarch 8kB + blosc 1.21.4 h0f2a231_0 conda-forge/linux-64 49kB + bokeh 3.1.1 pyhd8ed1ab_0 conda-forge/noarch 6MB + boltons 23.0.0 pyhd8ed1ab_0 conda-forge/noarch 303kB + boost-cpp 1.78.0 h5adbc97_2 conda-forge/linux-64 16MB + bottleneck 1.3.7 py39h389d5f1_0 conda-forge/linux-64 122kB + branca 0.6.0 pyhd8ed1ab_0 conda-forge/noarch 28kB + brotli 1.0.9 h166bdaf_8 conda-forge/linux-64 19kB + brotli-bin 1.0.9 h166bdaf_8 conda-forge/linux-64 20kB + bzip2 1.0.8 h7f98852_4 conda-forge/linux-64 496kB + c-ares 1.19.1 hd590300_0 conda-forge/linux-64 113kB + ca-certificates 2023.5.7 hbcca054_0 conda-forge/linux-64 Cached + cairo 1.16.0 ha61ee94_1014 conda-forge/linux-64 2MB + certifi 2023.5.7 pyhd8ed1ab_0 conda-forge/noarch Cached + cf_xarray 0.8.1 pyhd8ed1ab_0 conda-forge/noarch 52kB + cfitsio 4.2.0 hd9d235c_0 …
Should be fixed by Ouranosinc/PAVICS-e2e-workflow-tests#121 |
…t xclim and ravenpy to smooth transition (#121) # Overview This new full build has latest of almost everything except `xclim` and `ravenpy` as intermediate step to smooth transition to `pandas` 2.2 freq strings changes. ## Changes - New: save conda env export, DockerHub build logs and Jenkins test result in the repo to track changes much more easily between releases - Jenkins: add `SAVE_RESULTING_NOTEBOOK_TIMEOUT` for slow notebooks or slow machine - Jupyter env changes: - add `conda-pack` so we can export the conda env outside of the docker image if need to run locally without docker - upgrade from Python 3.9 to 3.11 - Relevant changes (alphabetical order): ```diff - - birdy=0.8.4=pyh1a96a4e_0 + - birdhouse-birdy==0.8.7 # major upgrade from v2 to v3 - - bokeh=2.4.3=pyhd8ed1ab_3 + - bokeh=3.4.1=pyhd8ed1ab_0 - - cartopy=0.21.1=py39h6e7ad6e_0 + - cartopy=0.23.0=py311h320fe9a_0 - - cf_xarray=0.8.0=pyhd8ed1ab_0 + - cf_xarray=0.9.0=pyhd8ed1ab_0 - - cfgrib=0.9.10.4=pyhd8ed1ab_0 + - cfgrib=0.9.11.0=pyhd8ed1ab_0 - - cftime=1.6.2=py39h2ae25f5_1 + - cftime=1.6.3=py311h1f0f07a_0 - - climpred=2.3.0=pyhd8ed1ab_0 + - climpred=2.4.0=pyhd8ed1ab_0 - - clisops=0.9.6=pyh1a96a4e_0 + - clisops=0.13.0=pyhca7485f_0 - - dask=2023.5.1=pyhd8ed1ab_0 + - dask=2024.5.0=pyhd8ed1ab_0 - - geopandas=0.13.0=pyhd8ed1ab_0 + - geopandas=0.14.4=pyhd8ed1ab_0 - - hvplot=0.8.3=pyhd8ed1ab_0 + - hvplot=0.9.2=pyhd8ed1ab_0 - - numpy=1.23.5=py39h3d75532_0 + - numpy=1.24.4=py311h64a7726_0 - - numba=0.57.0=py39hb75a051_1 + - numba=0.59.1=py311h96b013e_0 # major upgrade from v1 to v2 - - pandas=1.3.5=py39hde0f152_0 + - pandas=2.1.4=py311h320fe9a_0 # major upgrade to v1 - - panel=0.14.4=pyhd8ed1ab_0 + - panel=1.4.2=pyhd8ed1ab_0 # major upgrade from v1 to v2 - - pydantic=1.10.8=py39hd1e30aa_0 + - pydantic=2.7.1=pyhd8ed1ab_0 # Python 3.9 to 3.11 - - python=3.9.16=h2782a2a_0_cpython + - python=3.11.6=hab00c5b_0_cpython - - raven-hydro=0.2.1=py39h8e2dbb5_1 + - raven-hydro=0.2.4=py311h64a4d7b_0 - - ravenpy=0.12.1=py39hf3d152e_0 + - ravenpy==0.13.1 - - rioxarray=0.14.1=pyhd8ed1ab_0 + - rioxarray=0.15.5=pyhd8ed1ab_0 - - roocs-utils=0.6.4=pyh1a96a4e_0 + - roocs-utils=0.6.8=pyhd8ed1ab_0 - - scipy=1.9.1=py39h8ba3f38_0 + - scipy=1.13.0=py311h517d4fd_1 - - xarray=2023.1.0=pyhd8ed1ab_0 + - xarray=2023.8.0=pyhd8ed1ab_0 - - xclim=0.43.0=py39hf3d152e_1 + - xclim=0.47.0=py311h38be061_0 - - xesmf=0.7.1=pyhd8ed1ab_0 + - xesmf=0.8.5=pyhd8ed1ab_0 - - xskillscore=0.0.24=pyhd8ed1ab_0 + - xskillscore=0.0.26=pyhd8ed1ab_0 + - xscen=0.8.2=pyhd8ed1ab_0 + - figanos==0.3.0 - - xncml==0.2 + - xncml==0.4.0 ``` ## Test - Deployed as "beta" image in production for bokeh visualization performance regression testing. - Manual test notebook https://github.com/Ouranosinc/PAVICS-landing/blob/master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb for bokeh visualization performance and it looks fine. - Jenkins build: - Default notebooks, all passed: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/54792e6510adfcd1bb21e1bd31fdfa36c5c634e0/docker/saved_buildout/jenkins-buildlogs-default.txt - Raven notebooks, only known `HydroShare_integration.ipynb` failing: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/931cfc924a147d07b59e88badff9f170e852a03b/docker/saved_buildout/jenkins-buildlogs-raven.txt ## Related Issue / Discussion - Matching notebook fixes: - Pavics-sdi: PR Ouranosinc/pavics-sdi#321 - Finch: PR url: None - PAVICS-landing: PR Ouranosinc/PAVICS-landing#78 - RavenPy: PR CSHS-CWRA/RavenPy#356 - Resolves Ouranosinc/PAVICS-landing#65 - Resolves Ouranosinc/PAVICS-landing#66 - Deployment to PAVICS: bird-house/birdhouse-deploy#453 - Jenkins-config changes for new notebooks: PR url: None - Other issues found while working on this one - computationalmodelling/nbval#204 - jupyterlab-contrib/jupyter-archive#132 - CSHS-CWRA/RavenPy#357 - CSHS-CWRA/RavenPy#361 - CSHS-CWRA/RavenPy#362 - Previous release: PR #134 ## Additional Information Full diff conda env export: 81deb99...931cfc9#diff-e8f2a6a53085ae29bb7cedc701c1d345a330651ae971555e85a5c005e94f4cd9 Full new conda env export: https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/931cfc924a147d07b59e88badff9f170e852a03b/docker/saved_buildout/conda-env-export.yml DockerHub build log https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/blob/931cfc924a147d07b59e88badff9f170e852a03b/docker/saved_buildout/docker-buildlogs.txt
Error below only happen with 3.10, not 3.9.
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