Add gradient and autodiff checks for linear operators #3921
Workflow file for this run
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| name: PyTest | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| get_dockerfiles: | |
| name: Get List of Dockerfiles for Containers | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: read | |
| outputs: | |
| imagenames: ${{ steps.set-matrix.outputs.imagenames }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Retrieve Docker Image Names | |
| id: set-matrix | |
| run: | | |
| # search for Dockerfile* in the docker directory, replace "Dockerfile" prefix with "mrpro" and to imagenames | |
| imagenames=$(find docker -type f -name 'Dockerfile*' -exec basename {} \; | sed 's/^Dockerfile/mrpro/') | |
| echo "image names: $imagenames" | |
| # if imagenames is empty - fail the workflow | |
| if [ -z "$imagenames" ]; then | |
| echo "No Dockerfiles found in the docker directory. Exiting..." | |
| exit 1 | |
| fi | |
| imagenames_latest=() | |
| for image in $imagenames | |
| do | |
| echo "checking $image ..." | |
| if docker manifest inspect "ghcr.io/ptb-mr/"$image":latest" >/dev/null; then | |
| echo "... $image added" | |
| imagenames_latest+=$image":" | |
| fi | |
| done | |
| echo "image names with tag latest: $imagenames_latest" | |
| imagenames_latest=$(echo $imagenames_latest | jq -R -c 'split(":")[:-1]') | |
| echo "image names with tag latest: $imagenames_latest" | |
| echo "imagenames=$imagenames_latest" >> $GITHUB_OUTPUT | |
| - name: Dockerfile Overview | |
| run: | | |
| echo "Final list of images with tag latest: ${{ steps.set-matrix.outputs.imagenames }}" | |
| test: | |
| name: Run Tests and Coverage Report | |
| needs: get_dockerfiles | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| imagename: ${{ fromJson(needs.get_dockerfiles.outputs.imagenames) }} | |
| container: | |
| image: ghcr.io/ptb-mr/${{ matrix.imagename }}:latest | |
| options: --user runner | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Install MRpro and Dependencies | |
| # use cpu version of torch | |
| run: pip install --index-url=https://download.pytorch.org/whl/cpu --extra-index-url https://pypi.org/simple/ --upgrade --upgrade-strategy eager .[test] | |
| - name: Install PyTest GitHub Annotation Plugin | |
| run: pip install pytest-github-actions-annotate-failures | |
| - name: Run PyTest and Generate Coverage Report | |
| # shell bash sets the -o pipefail | |
| run: | | |
| pytest -n 4 -m "not cuda" --junitxml=pytest.xml \ | |
| --cov-report=term-missing:skip-covered --cov=mrpro | tee pytest-coverage.txt | |
| shell: bash | |
| - name: Upload PyTest Coverage Report | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-report-${{ matrix.imagename }} | |
| path: | | |
| pytest-coverage.txt | |
| pytest.xml | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| # Cancel in-progress runs when a new workflow with the same group name is triggered | |
| cancel-in-progress: true |