How To's and Examples

Here are several "How To" examples of downstream analysis of PacBio® datasets or working with the SMRT® Analysis software. Each example shows how you can take output from the PacBio System and perform biologically meaningful analysis or integrate with the software with a script or tool. How To's may come with downloadable scripts and data files, sometimes available as a dataset, and sometimes more ad hoc. Some push the boundaries into new application areas, whereas others address more routine questions you may encounter.

Learn how to:

• Analyze barcoded samples
• [Detect base modifications with SMRT Sequencing](Detect Base Modifications with SMRT Sequencing)
• [Detect variants with targeted resequencing: EGFR-MET](EGFR-MET Amplicons)
• [Write a custom SMRT Pipe module](Write a Custom SMRT Pipe module)
• De Novo Assembly Methods
• [Identify minor species: BCR-ABL fusion protein](BCR-ABL Fusion Protein)
• [Transcriptome Analysis] (https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Transcriptome-Analysis)

See also: Datasets.