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Pull requests: PavlidisLab/Gemma

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Pull requests list

Add support for loading simple cell type annotations from GEO supplem…
#1311 opened Dec 20, 2024 by arteymix • Draft
Adapt the DiffExAnalyzer to handle pre-existing subset structure enhancement Enhance the code or user experience single cell Issues related to single-cell data support
#1309 opened Dec 20, 2024 by arteymix • Draft
Hotfix 1.31.13
#1305 opened Dec 17, 2024 by arteymix Loading… 1.31.13
Add a utility to create a SSH tunnel for the database
#1237 opened Sep 29, 2024 by arteymix Loading…
Replace usages of SimpleFormController with annotation-based endpoints
#1173 opened Jul 2, 2024 by arteymix • Draft 1.32.0
1
Multiple databases lock
#1165 opened Jun 26, 2024 by arteymix • Draft
1
Bump org.springframework:spring-context from 3.2.18.RELEASE to 5.2.21.RELEASE dependencies Pull requests that update a dependency file
#1147 opened Jun 11, 2024 by dependabot bot Loading…
Add a second baseline group and a migration to port existing result sets
#1139 opened Jun 6, 2024 by arteymix • Draft
3 tasks
1.32.0
1
1
Bump org.springframework.security:spring-security-core from 3.2.10.RELEASE to 6.1.8 dependencies Pull requests that update a dependency file
#1083 opened Apr 3, 2024 by dependabot bot Loading…
Prototype for storing single-cell data single cell Issues related to single-cell data support
#1020 opened Feb 5, 2024 by arteymix • Draft
4 of 6 tasks
7
@arteymix
12
Generate wiki markup for updating curator documentation
#1018 opened Feb 2, 2024 by arteymix • Draft
1
Add a command line tool for linting ACLs
#997 opened Jan 22, 2024 by arteymix Loading…
2 of 7 tasks
1
Bump com.jayway.jsonpath:json-path from 0.8.1 to 2.9.0 in /gemma-web dependencies Pull requests that update a dependency file low priority
#995 opened Jan 22, 2024 by dependabot bot Loading…
1
Improve how directories are specfied in Jenkinsfile infrastructure Issues that don't require code changes
#955 opened Nov 25, 2023 by arteymix • Draft
2 tasks
@arteymix
2
Improve cacheability of filters database Issues that involve the database performance
#871 opened Sep 25, 2023 by arteymix • Draft
1 task
2
@arteymix
9
Eliminate offset/limit parameters and improve the code for retrieving…
#859 opened Sep 20, 2023 by arteymix • Draft 1.32.0
2
1
Add support for secured fields
#810 opened Aug 27, 2023 by arteymix Loading… 1.32.0
Introduce the Specification<T> interface for find() and findOrCreate() cleanup Code reorganization and changes that should not impact functionality enhancement Enhance the code or user experience
#809 opened Aug 25, 2023 by arteymix • Draft
2
allow backfilling of counts and rpkm without triggering preprocessing
#771 opened Jul 17, 2023 by ppavlidis Loading…
2 of 3 tasks
1.32.0
@arteymix
8
Add support for subqueries for the Criteria-based filtering service
#715 opened Jun 5, 2023 by arteymix • Draft 1.32.0
1
@arteymix
Store additional metadata for ExpressionExperiment and BioAssay in the database low priority
#668 opened Apr 27, 2023 by arteymix • Draft
2 tasks
1.32.0
3
Bump spring-core from 3.2.18.RELEASE to 6.0.8 dependencies Pull requests that update a dependency file
#650 opened Apr 17, 2023 by dependabot bot Loading…
add convenience methods for finding rows by name
#641 opened Apr 12, 2023 by ppavlidis Loading…
5
add basic support for tracking gene type (not exposed anywhere) low priority
#638 opened Apr 11, 2023 by ppavlidis Loading… 1.32.0
7
Use AsyncFactoryBean for loading ontologies
#621 opened Apr 2, 2023 by arteymix • Draft 1.32.0
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