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Releases: Psy-Fer/buttery-eel

buttery-eel v0.7.1

14 Feb 03:03
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This patch fixes an issue when running buttery-eel with dorado-server versions older than 7.6.8

  • fix namespace error on estimate_poly_a by doing a version check

Full Changelog: v0.7.0...v0.7.1

buttery-eel v0.7.0

05 Feb 05:48
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buttery-eel v0.7.0 Pre-release
Pre-release

This version has a bug when running with dorado-server versions lower than 7.6.8 - Please use v0.7.1 or newer

buttery-eel v0.7.0 significantly updates the error model.
With the new --resume option, runs that did not finish can be continued without re-basecalling reads already processed.

This release has been tested up to dorado-server-7.6.8

What's Changed

  • better error handling
  • --resume to resume a crashed run by providing the fastq or sam file of the crashed run
  • --dorado_model_path to work like dorado model paths
  • --estimate_poly_a polyA/T tail estimation
  • samples per second reported at the end of a run
  • qscores reported as floats instead of ints and samtag changed to qs:f: (alignment with latest dorado changes)
  • update split script to handle floats and legacy ints
  • updated docs

Pull request:

  • Handle errors better and add new features by @Psy-Fer in #72

Full Changelog: v0.6.0...v0.7.0

buttery-eel v0.6.0

05 Nov 07:18
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What's Changed

  • RNA fixes and u2t conversion by @Psy-Fer in #61
  • thread model doc update
  • test updates and fixes for new test machine

Full Changelog: v0.5.1...v0.6.0

buttery-eel v0.5.1

18 Sep 08:14
911016f
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What's Changed

Full Changelog: v0.5.0...v0.5.1

buttery-eel v0.5.0

05 Sep 03:25
c06452a
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What's Changed

  • 7.4.12 dorado for v0.5.0 buttery-eel by @Psy-Fer in #47
  • Added more SAM tags
  • Breaking API changes accounted for - see README
  • Prints total reads basecalled at the end
  • Skip queue introduced and will write a skip file if skip reads are detected
  • macOS changes to the queue library so it works
  • read_splitting on by default for ont lib >=7.4.12

Full Changelog: v0.4.3...v0.5.0

Buttery-eel v0.4.3

17 Jul 06:09
31ca0ad
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What's Changed

Fixed demux parent/read ID issue
major code restructure and compatibility with lastest dorado server lib name change: ont-pybasecall-client-lib
prep for Duplex calling, but currently unavailable due to bugs/missing methods in ONT library.

Full Changelog: v0.4.2...v0.4.3

buttery-eel v0.4.2

09 Nov 03:24
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What's Changed

Full Changelog: v0.4.1...v0.4.2

buttery-eel v0.4.1

17 Oct 02:25
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What's Changed

  • pulling main to dev for fixing dorado by @Psy-Fer in #22
  • Fix dorado calls by @Psy-Fer in #23
  • default basecaller updated to dorado-server 7.1.4

This release fixes the problems with dorado reads not matching the output from the vanilla dorado-server.
Please use this release if you are going to use dorado server

Full Changelog: v0.4.0...v0.4.1

buttery-eel v0.4.0

11 Oct 03:55
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What's Changed

Barcode demultiplexing
Dorado compatibility
Updated documentation
Update format specs
Extensive testing

Feature complete basecaller for guppy v6.5.7
Tested with dorado server v7.1.4 (with differing results problem)

Full Changelog: v0.3.3...v0.4.0

buttery-eel v0.3.3

10 Oct 09:18
4abe619
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What's Changed

Fix read_id in read_splitting not being written correctly to fastq

Full Changelog: v0.2.4...v0.3.3