Releases: Psy-Fer/buttery-eel
buttery-eel v0.7.1
This patch fixes an issue when running buttery-eel with dorado-server versions older than 7.6.8
- fix namespace error on
estimate_poly_a
by doing a version check
Full Changelog: v0.7.0...v0.7.1
buttery-eel v0.7.0
This version has a bug when running with dorado-server versions lower than 7.6.8 - Please use v0.7.1 or newer
buttery-eel v0.7.0 significantly updates the error model.
With the new --resume
option, runs that did not finish can be continued without re-basecalling reads already processed.
This release has been tested up to dorado-server-7.6.8
What's Changed
- better error handling
--resume
to resume a crashed run by providing the fastq or sam file of the crashed run--dorado_model_path
to work like dorado model paths--estimate_poly_a
polyA/T tail estimation- samples per second reported at the end of a run
- qscores reported as floats instead of ints and samtag changed to
qs:f:
(alignment with latest dorado changes) - update split script to handle floats and legacy ints
- updated docs
Pull request:
Full Changelog: v0.6.0...v0.7.0
buttery-eel v0.6.0
What's Changed
- RNA fixes and u2t conversion by @Psy-Fer in #61
- thread model doc update
- test updates and fixes for new test machine
Full Changelog: v0.5.1...v0.6.0
buttery-eel v0.5.1
buttery-eel v0.5.0
What's Changed
- 7.4.12 dorado for v0.5.0 buttery-eel by @Psy-Fer in #47
- Added more SAM tags
- Breaking API changes accounted for - see README
- Prints total reads basecalled at the end
- Skip queue introduced and will write a skip file if skip reads are detected
- macOS changes to the queue library so it works
- read_splitting on by default for ont lib >=7.4.12
Full Changelog: v0.4.3...v0.5.0
Buttery-eel v0.4.3
What's Changed
Fixed demux parent/read ID issue
major code restructure and compatibility with lastest dorado server lib name change: ont-pybasecall-client-lib
prep for Duplex calling, but currently unavailable due to bugs/missing methods in ONT library.
Full Changelog: v0.4.2...v0.4.3
buttery-eel v0.4.2
What's Changed
- cut off params update by @hasindu2008 in #24
- update dev from main by @Psy-Fer in #25
- Fix for old guppy API and mod calling newline bug by @Psy-Fer in #27
Full Changelog: v0.4.1...v0.4.2
buttery-eel v0.4.1
What's Changed
- pulling main to dev for fixing dorado by @Psy-Fer in #22
- Fix dorado calls by @Psy-Fer in #23
- default basecaller updated to dorado-server 7.1.4
This release fixes the problems with dorado reads not matching the output from the vanilla dorado-server.
Please use this release if you are going to use dorado server
Full Changelog: v0.4.0...v0.4.1
buttery-eel v0.4.0
What's Changed
Barcode demultiplexing
Dorado compatibility
Updated documentation
Update format specs
Extensive testing
Feature complete basecaller for guppy v6.5.7
Tested with dorado server v7.1.4
(with differing results problem)
Full Changelog: v0.3.3...v0.4.0
buttery-eel v0.3.3
What's Changed
Fix read_id in read_splitting not being written correctly to fastq
Full Changelog: v0.2.4...v0.3.3