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Removed deprecated files and Updated docs #78

Merged
merged 103 commits into from
Jul 28, 2022
Merged

Removed deprecated files and Updated docs #78

merged 103 commits into from
Jul 28, 2022

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zargham-ahmad
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This PR includes the following:

  • Removed deprecated files. I have mainly focused on the deprecated R script and their corresponding Rd file, didn't touch the data folder and their corresponding Rd files Remove deprecated files #60
  • Document using roxygen2, 1) added export statement to currently exported function 2) updated function calls to explicit function calls instead of the import statement 3) added examples 4) added roxygen2 statement to functions (missing for now reference , author fields) Document using roxygen2 #50
  • updated the current Rd files 1) updated the outdated arguments 2) updated the undocumented arguments (marked by TBA) 3) fixed typos Missing arguments documentation #26

closes #60, closes #50, closes #26

zargham-ahmad and others added 30 commits July 19, 2022 15:15
@zargham-ahmad
removed adaptive.bin.2 files
103d297
@zargham-ahmad
removed cdf.to.ftr files
155fab6
@zargham-ahmad
removed draw.cfd.2d files
62175b1
@zargham-ahmad
removed draw.txt.2d files
5f638c5
@zargham-ahmad
removed eic.disect files
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@zargham-ahmad
removed EIC.plot.learn files
df8b2ee
@zargham-ahmad
removed EIC.plot files
7b893ab
@zargham-ahmad
removed eic.pred files
d620647
@zargham-ahmad
removed eic.qual files
2d0ac86
@zargham-ahmad
removed learn.cdf files
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@zargham-ahmad
removed present.cdf.3d files and prof.Rd file
3080c8a
@zargham-ahmad
removed proc.txt files
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@zargham-ahmad
removed semi.sup.learn files
6c68fea
@zargham-ahmad
removed target.search files
cdb367b
@zargham-ahmad
again added prof.Rd file
06af3b5
@zargham-ahmad
added export stmt to currently exported func
e423177
@zargham-ahmad
updated func calls with explicit calls
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@zargham-ahmad
added export for augment_with_known_features
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@zargham-ahmad
Merge branch 'RECETOX:master' into update-doc-depre-files
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@zargham-ahmad
added example for adjust.time
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@zargham-ahmad
added example for adaptive.bin
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@zargham-ahmad
added example for combine.seq.3
6ff835a
@zargham-ahmad
added example for cont.index
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@zargham-ahmad
upated example for feature.align and adjust.time
2d8b63c
@zargham-ahmad
added example for find.match
5f13d33
@zargham-ahmad
added example for find.tol
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@zargham-ahmad
added example for find.tol.time
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@zargham-ahmad
added example for find.turn.point
a156c13
@zargham-ahmad
added example for hybrid
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@zargham-ahmad
added example for interpol.area
c3dbe39
@zargham-ahmad
added param and title stmt for extract_features
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@zargham-ahmad
added example for extract_features
b1a674a
@zargham-ahmad
updated adaptive.bin.Rd
c2590fa
@zargham-ahmad
updated combine.seq.3 with return
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@zargham-ahmad
updated adjust.time and Rd file
b7e5f44
@zargham-ahmad
updated cont.index.Rd file
4c69515
@zargham-ahmad
updated param for feature.align
4217a6b
@zargham-ahmad
updated return for feature.align and Rd file
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@zargham-ahmad
added return for find.tol.time and Rd file
b44bb3b
@zargham-ahmad
updated param and some typos for hybrid and Rd file
b38e025
@zargham-ahmad
updated param for proc.cdf.Rd
a9d9931
@zargham-ahmad
updated param for prof.to.features and Rd file
6a14070
@zargham-ahmad
fixed typos for semi.sup and two.step.hybrid
ce4577f
@zargham-ahmad
updated recover.weaker.Rd
ca757ec
@zargham-ahmad
fixed typos in rm.ridge.Rd
493c3e5
@zargham-ahmad
updated param in semi.sup.Rd
4bd7607
@zargham-ahmad
updated param and fixed typos in two.step.hybrid
eac0883
@zargham-ahmad
added description for extract_features
b9fc3c8
@zargham-ahmad
updated param and fixed typos in unsupervised
b83dbcc
hechth
hechth approved these changes Jul 28, 2022
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@hechth hechth mentioned this pull request Jul 28, 2022
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@hechth hechth mentioned this pull request Jul 28, 2022
Closed
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@hechth hechth merged commit 87933dd into RECETOX:master Jul 28, 2022
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@hechth hechth hechth approved these changes

@maximskorik maximskorik Awaiting requested review from maximskorik

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Remove deprecated files Document using roxygen2 Missing arguments documentation
2 participants
@zargham-ahmad @hechth