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[SCHEMATIC-192] V24.12.1 into Main#1562

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andrewelamb merged 105 commits intomainSage-Bionetworks/schematic:mainfrom v24.12.1-rc-devSage-Bionetworks/schematic:v24.12.1-rc-devCopy head branch name to clipboardDec 16, 2024

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Commits on Sep 10, 2024

• add new tests

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• handle merge conflict

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• add unit tests

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Commits on Oct 10, 2024

• Update schematic/models/validate_attribute.py

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Commits on Oct 11, 2024

• added tests

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Commits on Oct 17, 2024

• Merge branch 'develop' into FDS-2333-ValidateAttribute-unit-tests

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Commits on Oct 21, 2024

• Update README.md

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• Update README.md

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• add unit tests

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Commits on Oct 22, 2024

• Update README.md

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• temp commit

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• remove old tests

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Commits on Oct 24, 2024

• [FDS-2386] Synapse entity tracking and code concurrency updates (#1505)

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• Merge branch 'develop' into FDS-2333-ValidateAttribute-unit-tests

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• Merge branch 'develop' into FDS-2347

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• ran black

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Commits on Oct 25, 2024

• Update CODEOWNERS

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• Merge pull request #1525 from Sage-Bionetworks/andrewelamb-patch-1

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• Merge pull request #1517 from Sage-Bionetworks/FDS-2333-ValidateAttribute-unit-tests

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• updated data model type rules to include error param

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• fix validate type attribute to use msg level param

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• Merge branch 'develop' into FDS-2506-type-val

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• added error handling

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• run black

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• create Node class

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• sat up Node class so that nodes with no displayName fields cause an error on creation

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Commits on Oct 26, 2024

• Merge pull request #1523 from Sage-Bionetworks/FDS-2347

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Commits on Oct 30, 2024

• Merge pull request #1522 from Sage-Bionetworks/develop-fds-2466-update-config.yml

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• Merge pull request #1526 from Sage-Bionetworks/FDS-2506-type-val

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• added new configs for CLI tests

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• added new manifests for testing CLI commands

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• automate manual CLI tests

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• ran black

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Commits on Nov 1, 2024

• Update CODEOWNERS

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• Update scan_repo.yml

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• Merge pull request #1531 from Sage-Bionetworks/thomasyu888-patch-1

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• Attach additional telemetry data to OTEL traces (#1519)

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• feat: added tracing for cross manifest validation and file name validation (#1509)

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Commits on Nov 4, 2024

• temp commit

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• Merge branch 'develop' into FDS-2238-automate-cli-tests

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Commits on Nov 5, 2024

• Updating contribution doc to expect squash and merge (#1534)

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• [FDS-2491] Integration tests for Schematic API Test plan (#1512)

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Commits on Nov 6, 2024

• [FDS-2500] Add Integration Tests for: Manifest Validation (#1516)

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Commits on Nov 7, 2024

• [FDS-2449] Lock sphinx version and update poetry.lock (#1530)

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• Merge branch 'develop' into FDS-2238-automate-cli-tests

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• manual test files now being saved in manifests folder

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• manual test files now being saved in manifests folder

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• remove lines to delete json files that were under git control

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• add try finally blocks to remove created files

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• add lines to remove created json files

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• Update file annotation store process to require filename be present in order to annotate file

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• add lines to remove created json files

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• Revert "Update file annotation store process to require filename be present in order to annotate file"

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• Don't attempt to annotate the table

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Commits on Nov 8, 2024

• add code in finally blocks to reset config to default values, when tests change them

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• complete submit manifest command test

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Commits on Nov 11, 2024

• add test for bug case

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• update test for table tidyness

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• remove unused import

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• remove etag column if already present when building temp file view

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Commits on Nov 12, 2024

• catch all exceptions to switch to sequential mode

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• update test for updated data

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• Revert "update test for updated data"

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• Revert "catch all exceptions to switch to sequential mode"

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• catch ValueErrors as well

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• Updates for integration test failures (#1537)

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• Merge branch 'develop' into schematic-126-file-annotation-storage-update

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• Merge branch 'develop' into FDS-2238-automate-cli-tests

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Commits on Nov 13, 2024

• Merge pull request #1535 from Sage-Bionetworks/schematic-126-file-annotation-storage-update

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• Merge pull request #1538 from Sage-Bionetworks/schematic-1-existing-eTag

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• add todos for removing config resets

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• [FDS-2525] Authenticated export of telemetry data (#1527)

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• temp reduce tests

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• restore tests

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• uncomment tests

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• redid how files are deleted, manual tests values are set

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• ran black

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Commits on Nov 14, 2024

• Merge pull request #1528 from Sage-Bionetworks/FDS-2238-automate-cli-tests

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• [SCHEMATIC-157] Make some dependencies required to avoid schematic CLI commands from potentially erroring when doing a pip install (#1540)

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• Merge branch 'main' into develop

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Commits on Nov 15, 2024

• Include schematic_api for now (#1547)

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• update toml version to 24.11.1 (#1548)

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Commits on Nov 19, 2024

• Merge branch 'main' into develop

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• [SCHEMATIC-193] Support exporting telemetry data from GH integration test runs (#1550)

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Commits on Nov 23, 2024

• [SCHEMATIC-30, SCHEMATIC-200] Add version to click cli / use pathlib.Path module for checking cache size (#1542)

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Commits on Nov 25, 2024

• [SCHEMATIC-212] Prevent traces from being combined (#1552)

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Commits on Dec 2, 2024

• [SCHEMATIC-163] Catch error when manifest is generated and existing one doesn't have entityId (#1551)

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Commits on Dec 10, 2024

• [SCHEMATIC-183] Use paths from file view for manifest generation (#1529)

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Commits on Dec 13, 2024

• [SCHEMATIC-214] Wrap pandas functions to support not including None with the NA values argument (#1553)

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• incremented packge version number

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• Update publish.yml

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• Update test.yml

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• Update api_test.yml

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• Update pdoc.yml

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• Update version.py

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Commits on Dec 16, 2024

• updates publish.yml (#1558) (#1561)

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