Aletsch v1.1.3

Fix duplicate names due to strand ID.

Aletsch v1.1.2

Fixed bug in log "error: id * has already been added to chain_set"; clear redundant print and code directories from v.1.1.1

Aletsch v1.1.1

Memory and running time improvement for v1.1.0. This improvement was primarily made by fixing the incorrect use of bam-file queries and by removing PCR duplicates.

Aletsch v1.1.0

• New framework with information of edge supports.
• Incorporating calculation and output of 50 features for scoring.
• This is the version tested in Aletsch's paper.

Aletsch v1.0.3

• new algorithm to determine boundaries

Aletsch v1.0.2

• reduce memory footprint
• assemble individual chromosomes

Aletsch v1.0.1

• First official release of Aletsch!

meta-scallop v0.1.8

• enable profiling and saving to file
• enable assembling individual chromosomes

meta-scallop v0.1.7

• fix bugs in merging graphs

meta-scallop v0.1.6

• significantly reduce memory footprint
• fix numerical issues