Filebrowser in CommandLineModules defaults to searching for "txt" files. #3
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jcfr
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Jun 20, 2020
This commit updates OpenSSL external project to default to OpenSSL 1.1.1g when Slicer is built against Qt >= 5.12.4. It fixes the following reported issues: * Ubuntu 18.04: fixes segmentation fault on startup when Slicer is built against Qt 5.12.9 or Qt 5.15. See [1] and [2] * macOS 10.13.6: fixes the following tests: - py_nomainwindow_qSlicerEditorModuleGenericTest - py_nomainwindow_test_slicer_environment - py_StandaloneEditorWidgetTest - py_SurfaceToolbox - py_ThresholdThreadingTest - py_WebEngine - qSlicerSequencesModuleWidgetGenericTest - qSlicerSslTest Examples of error messages listed in [3] [1] startup segmentation fault when built against Qt 5.12.9: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007fe8026e194c in getrn () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #2 0x00007fe8026e1c7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #3 0x00007fe80262cd94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #4 0x00007fe7fc104392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007fe8186d947f in __pthread_once_slow (once_control=0x7fe7fc160928, init_routine=0x7fe7fc1042a0) at pthread_once.c:116 #6 0x00007fe7f589c78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007fe7fc10457b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007fe81d1513ef in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl11.cpp:92 #9 0x00007fe823d6632c in qSlicerCoreApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007fe823f36a26 in qSlicerApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007fe823f37c25 in qSlicerApplication::qSlicerApplication (this=0x7ffc3c2f00c0, _argc=@0x7ffc3c2f006c: 1, _argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056387ef18fc6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056387ef192fe in main (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [2] startup segmentation fault when built against Qt 5.15: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007f7ed11fa94c in getrn () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #2 0x00007f7ed11fac7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #3 0x00007f7ed1145d94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #4 0x00007f7eb00cc392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007f7ec4d4647f in __pthread_once_slow (once_control=0x7f7eb0128928, init_routine=0x7f7eb00cc2a0) at pthread_once.c:116 #6 0x00007f7eab60d78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007f7eb00cc57b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007f7ed0d499f7 in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl.cpp:1954 #9 0x00007f7edd7a5780 in qSlicerCoreApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007f7ede3ac0dc in qSlicerApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007f7ede3ad2db in qSlicerApplication::qSlicerApplication (this=0x7ffee9ad17b0, _argc=@0x7ffee9ad175c: 1, _argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056465aebefa6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056465aebf2de in main (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [3] macOS error message reported on test failure: qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_ssl qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_crypto qt.network.ssl: QSslSocket: cannot resolve ASN1_STRING_get0_data qt.network.ssl: QSslSocket: cannot resolve EVP_CIPHER_CTX_reset qt.network.ssl: QSslSocket: cannot resolve EVP_PKEY_up_ref qt.network.ssl: QSslSocket: cannot resolve RSA_bits qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_new_null qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_push qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_num qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_pop_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_value qt.network.ssl: QSslSocket: cannot resolve DH_get0_pqg qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_options qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_ciphersuites qt.network.ssl: QSslSocket: cannot resolve SSL_set_psk_use_session_callback qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_is_resumable qt.network.ssl: QSslSocket: cannot resolve SSL_get_client_random qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_get_master_key qt.network.ssl: QSslSocket: cannot resolve SSL_session_reused qt.network.ssl: QSslSocket: cannot resolve SSL_set_options qt.network.ssl: QSslSocket: cannot resolve TLS_method qt.network.ssl: QSslSocket: cannot resolve TLS_client_method qt.network.ssl: QSslSocket: cannot resolve TLS_server_method qt.network.ssl: QSslSocket: cannot resolve X509_up_ref qt.network.ssl: QSslSocket: cannot resolve X509_STORE_CTX_get0_chain qt.network.ssl: QSslSocket: cannot resolve X509_getm_notBefore qt.network.ssl: QSslSocket: cannot resolve X509_getm_notAfter qt.network.ssl: QSslSocket: cannot resolve X509_get_version qt.network.ssl: QSslSocket: cannot resolve X509_STORE_set_ex_data qt.network.ssl: QSslSocket: cannot resolve X509_STORE_get_ex_data qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version_num qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version qt.network.ssl: Incompatible version of OpenSSL [SSL] SSL support disabled - Failed to load SSL library ! [SSL] Failed to load Slicer.crt
jcfr
pushed a commit
that referenced
this issue
Jun 21, 2020
This commit updates OpenSSL external project to default to OpenSSL 1.1.1g when Slicer is built against Qt >= 5.12.4. It fixes the following reported issues: * Ubuntu 18.04: fixes segmentation fault on startup when Slicer is built against Qt 5.12.9 or Qt 5.15. See [1] and [2] * macOS 10.13.6: fixes the following tests: - py_nomainwindow_qSlicerEditorModuleGenericTest - py_nomainwindow_test_slicer_environment - py_StandaloneEditorWidgetTest - py_SurfaceToolbox - py_ThresholdThreadingTest - py_WebEngine - qSlicerSequencesModuleWidgetGenericTest - qSlicerSslTest Examples of error messages listed in [3] [1] startup segmentation fault when built against Qt 5.12.9: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007fe8026e194c in getrn () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #2 0x00007fe8026e1c7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #3 0x00007fe80262cd94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #4 0x00007fe7fc104392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007fe8186d947f in __pthread_once_slow (once_control=0x7fe7fc160928, init_routine=0x7fe7fc1042a0) at pthread_once.c:116 #6 0x00007fe7f589c78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007fe7fc10457b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007fe81d1513ef in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl11.cpp:92 #9 0x00007fe823d6632c in qSlicerCoreApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007fe823f36a26 in qSlicerApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007fe823f37c25 in qSlicerApplication::qSlicerApplication (this=0x7ffc3c2f00c0, _argc=@0x7ffc3c2f006c: 1, _argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056387ef18fc6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056387ef192fe in main (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [2] startup segmentation fault when built against Qt 5.15: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007f7ed11fa94c in getrn () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #2 0x00007f7ed11fac7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #3 0x00007f7ed1145d94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #4 0x00007f7eb00cc392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007f7ec4d4647f in __pthread_once_slow (once_control=0x7f7eb0128928, init_routine=0x7f7eb00cc2a0) at pthread_once.c:116 #6 0x00007f7eab60d78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007f7eb00cc57b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007f7ed0d499f7 in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl.cpp:1954 #9 0x00007f7edd7a5780 in qSlicerCoreApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007f7ede3ac0dc in qSlicerApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007f7ede3ad2db in qSlicerApplication::qSlicerApplication (this=0x7ffee9ad17b0, _argc=@0x7ffee9ad175c: 1, _argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056465aebefa6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056465aebf2de in main (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [3] macOS error message reported on test failure: qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_ssl qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_crypto qt.network.ssl: QSslSocket: cannot resolve ASN1_STRING_get0_data qt.network.ssl: QSslSocket: cannot resolve EVP_CIPHER_CTX_reset qt.network.ssl: QSslSocket: cannot resolve EVP_PKEY_up_ref qt.network.ssl: QSslSocket: cannot resolve RSA_bits qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_new_null qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_push qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_num qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_pop_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_value qt.network.ssl: QSslSocket: cannot resolve DH_get0_pqg qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_options qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_ciphersuites qt.network.ssl: QSslSocket: cannot resolve SSL_set_psk_use_session_callback qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_is_resumable qt.network.ssl: QSslSocket: cannot resolve SSL_get_client_random qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_get_master_key qt.network.ssl: QSslSocket: cannot resolve SSL_session_reused qt.network.ssl: QSslSocket: cannot resolve SSL_set_options qt.network.ssl: QSslSocket: cannot resolve TLS_method qt.network.ssl: QSslSocket: cannot resolve TLS_client_method qt.network.ssl: QSslSocket: cannot resolve TLS_server_method qt.network.ssl: QSslSocket: cannot resolve X509_up_ref qt.network.ssl: QSslSocket: cannot resolve X509_STORE_CTX_get0_chain qt.network.ssl: QSslSocket: cannot resolve X509_getm_notBefore qt.network.ssl: QSslSocket: cannot resolve X509_getm_notAfter qt.network.ssl: QSslSocket: cannot resolve X509_get_version qt.network.ssl: QSslSocket: cannot resolve X509_STORE_set_ex_data qt.network.ssl: QSslSocket: cannot resolve X509_STORE_get_ex_data qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version_num qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version qt.network.ssl: Incompatible version of OpenSSL [SSL] SSL support disabled - Failed to load SSL library ! [SSL] Failed to load Slicer.crt
jcfr
pushed a commit
that referenced
this issue
Jun 23, 2020
This commit updates OpenSSL external project to default to OpenSSL 1.1.1g when Slicer is built against Qt >= 5.12.4. It fixes the following reported issues: * Ubuntu 18.04: fixes segmentation fault on startup when Slicer is built against Qt 5.12.9 or Qt 5.15. See [1] and [2] * macOS 10.13.6: fixes the following tests: - py_nomainwindow_qSlicerEditorModuleGenericTest - py_nomainwindow_test_slicer_environment - py_StandaloneEditorWidgetTest - py_SurfaceToolbox - py_ThresholdThreadingTest - py_WebEngine - qSlicerSequencesModuleWidgetGenericTest - qSlicerSslTest Examples of error messages listed in [3] [1] startup segmentation fault when built against Qt 5.12.9: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007fe8026e194c in getrn () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #2 0x00007fe8026e1c7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #3 0x00007fe80262cd94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #4 0x00007fe7fc104392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007fe8186d947f in __pthread_once_slow (once_control=0x7fe7fc160928, init_routine=0x7fe7fc1042a0) at pthread_once.c:116 #6 0x00007fe7f589c78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007fe7fc10457b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007fe81d1513ef in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl11.cpp:92 #9 0x00007fe823d6632c in qSlicerCoreApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007fe823f36a26 in qSlicerApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007fe823f37c25 in qSlicerApplication::qSlicerApplication (this=0x7ffc3c2f00c0, _argc=@0x7ffc3c2f006c: 1, _argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056387ef18fc6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056387ef192fe in main (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [2] startup segmentation fault when built against Qt 5.15: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007f7ed11fa94c in getrn () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #2 0x00007f7ed11fac7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #3 0x00007f7ed1145d94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #4 0x00007f7eb00cc392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007f7ec4d4647f in __pthread_once_slow (once_control=0x7f7eb0128928, init_routine=0x7f7eb00cc2a0) at pthread_once.c:116 #6 0x00007f7eab60d78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007f7eb00cc57b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007f7ed0d499f7 in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl.cpp:1954 #9 0x00007f7edd7a5780 in qSlicerCoreApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007f7ede3ac0dc in qSlicerApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007f7ede3ad2db in qSlicerApplication::qSlicerApplication (this=0x7ffee9ad17b0, _argc=@0x7ffee9ad175c: 1, _argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056465aebefa6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056465aebf2de in main (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [3] macOS error message reported on test failure: qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_ssl qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_crypto qt.network.ssl: QSslSocket: cannot resolve ASN1_STRING_get0_data qt.network.ssl: QSslSocket: cannot resolve EVP_CIPHER_CTX_reset qt.network.ssl: QSslSocket: cannot resolve EVP_PKEY_up_ref qt.network.ssl: QSslSocket: cannot resolve RSA_bits qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_new_null qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_push qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_num qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_pop_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_value qt.network.ssl: QSslSocket: cannot resolve DH_get0_pqg qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_options qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_ciphersuites qt.network.ssl: QSslSocket: cannot resolve SSL_set_psk_use_session_callback qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_is_resumable qt.network.ssl: QSslSocket: cannot resolve SSL_get_client_random qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_get_master_key qt.network.ssl: QSslSocket: cannot resolve SSL_session_reused qt.network.ssl: QSslSocket: cannot resolve SSL_set_options qt.network.ssl: QSslSocket: cannot resolve TLS_method qt.network.ssl: QSslSocket: cannot resolve TLS_client_method qt.network.ssl: QSslSocket: cannot resolve TLS_server_method qt.network.ssl: QSslSocket: cannot resolve X509_up_ref qt.network.ssl: QSslSocket: cannot resolve X509_STORE_CTX_get0_chain qt.network.ssl: QSslSocket: cannot resolve X509_getm_notBefore qt.network.ssl: QSslSocket: cannot resolve X509_getm_notAfter qt.network.ssl: QSslSocket: cannot resolve X509_get_version qt.network.ssl: QSslSocket: cannot resolve X509_STORE_set_ex_data qt.network.ssl: QSslSocket: cannot resolve X509_STORE_get_ex_data qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version_num qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version qt.network.ssl: Incompatible version of OpenSSL [SSL] SSL support disabled - Failed to load SSL library ! [SSL] Failed to load Slicer.crt
jcfr
pushed a commit
that referenced
this issue
Jun 23, 2020
This commit updates OpenSSL external project to default to OpenSSL 1.1.1g when Slicer is built against Qt >= 5.12.4. It enables parallel build when building against OpenSSL >= 1.1.0 It uses OpenSSL 1.1.1g source archives including a fix for building on macOS against zlib. See pull request 12238 at https://github.com/openssl/openssl/pull/ It fixes the following issues reported when building against older OpenSSL version: * Ubuntu 18.04: fixes segmentation fault on startup when Slicer is built against Qt 5.12.9 or Qt 5.15. See [1] and [2] * macOS 10.13.6: fixes the following tests: - py_nomainwindow_qSlicerEditorModuleGenericTest - py_nomainwindow_test_slicer_environment - py_StandaloneEditorWidgetTest - py_SurfaceToolbox - py_ThresholdThreadingTest - py_WebEngine - qSlicerSequencesModuleWidgetGenericTest - qSlicerSslTest Examples of error messages listed in [3] [1] startup segmentation fault when built against Qt 5.12.9: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007fe8026e194c in getrn () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #2 0x00007fe8026e1c7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #3 0x00007fe80262cd94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #4 0x00007fe7fc104392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007fe8186d947f in __pthread_once_slow (once_control=0x7fe7fc160928, init_routine=0x7fe7fc1042a0) at pthread_once.c:116 #6 0x00007fe7f589c78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007fe7fc10457b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007fe81d1513ef in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl11.cpp:92 #9 0x00007fe823d6632c in qSlicerCoreApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007fe823f36a26 in qSlicerApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007fe823f37c25 in qSlicerApplication::qSlicerApplication (this=0x7ffc3c2f00c0, _argc=@0x7ffc3c2f006c: 1, _argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056387ef18fc6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056387ef192fe in main (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [2] startup segmentation fault when built against Qt 5.15: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007f7ed11fa94c in getrn () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #2 0x00007f7ed11fac7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #3 0x00007f7ed1145d94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #4 0x00007f7eb00cc392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007f7ec4d4647f in __pthread_once_slow (once_control=0x7f7eb0128928, init_routine=0x7f7eb00cc2a0) at pthread_once.c:116 #6 0x00007f7eab60d78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007f7eb00cc57b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007f7ed0d499f7 in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl.cpp:1954 #9 0x00007f7edd7a5780 in qSlicerCoreApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007f7ede3ac0dc in qSlicerApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007f7ede3ad2db in qSlicerApplication::qSlicerApplication (this=0x7ffee9ad17b0, _argc=@0x7ffee9ad175c: 1, _argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056465aebefa6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056465aebf2de in main (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [3] macOS error message reported on test failure: qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_ssl qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_crypto qt.network.ssl: QSslSocket: cannot resolve ASN1_STRING_get0_data qt.network.ssl: QSslSocket: cannot resolve EVP_CIPHER_CTX_reset qt.network.ssl: QSslSocket: cannot resolve EVP_PKEY_up_ref qt.network.ssl: QSslSocket: cannot resolve RSA_bits qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_new_null qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_push qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_num qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_pop_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_value qt.network.ssl: QSslSocket: cannot resolve DH_get0_pqg qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_options qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_ciphersuites qt.network.ssl: QSslSocket: cannot resolve SSL_set_psk_use_session_callback qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_is_resumable qt.network.ssl: QSslSocket: cannot resolve SSL_get_client_random qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_get_master_key qt.network.ssl: QSslSocket: cannot resolve SSL_session_reused qt.network.ssl: QSslSocket: cannot resolve SSL_set_options qt.network.ssl: QSslSocket: cannot resolve TLS_method qt.network.ssl: QSslSocket: cannot resolve TLS_client_method qt.network.ssl: QSslSocket: cannot resolve TLS_server_method qt.network.ssl: QSslSocket: cannot resolve X509_up_ref qt.network.ssl: QSslSocket: cannot resolve X509_STORE_CTX_get0_chain qt.network.ssl: QSslSocket: cannot resolve X509_getm_notBefore qt.network.ssl: QSslSocket: cannot resolve X509_getm_notAfter qt.network.ssl: QSslSocket: cannot resolve X509_get_version qt.network.ssl: QSslSocket: cannot resolve X509_STORE_set_ex_data qt.network.ssl: QSslSocket: cannot resolve X509_STORE_get_ex_data qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version_num qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version qt.network.ssl: Incompatible version of OpenSSL [SSL] SSL support disabled - Failed to load SSL library ! [SSL] Failed to load Slicer.crt
jcfr
added a commit
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Jun 23, 2020
This commit updates OpenSSL external project to default to OpenSSL 1.1.1g when Slicer is built against Qt >= 5.12.4. It enables parallel build when building against OpenSSL >= 1.1.0 It uses OpenSSL 1.1.1g source archives including a fix for building on macOS against zlib. See pull request 12238 at https://github.com/openssl/openssl/pull/ It fixes the following issues reported when building against older OpenSSL version: * Ubuntu 18.04: fixes segmentation fault on startup when Slicer is built against Qt 5.12.9 or Qt 5.15. See [1] and [2] * macOS 10.13.6: fixes the following tests: - py_nomainwindow_qSlicerEditorModuleGenericTest - py_nomainwindow_test_slicer_environment - py_StandaloneEditorWidgetTest - py_SurfaceToolbox - py_ThresholdThreadingTest - py_WebEngine - qSlicerSequencesModuleWidgetGenericTest - qSlicerSslTest Examples of error messages listed in [3] [1] startup segmentation fault when built against Qt 5.12.9: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007fe8026e194c in getrn () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #2 0x00007fe8026e1c7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #3 0x00007fe80262cd94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #4 0x00007fe7fc104392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007fe8186d947f in __pthread_once_slow (once_control=0x7fe7fc160928, init_routine=0x7fe7fc1042a0) at pthread_once.c:116 #6 0x00007fe7f589c78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007fe7fc10457b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007fe81d1513ef in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl11.cpp:92 #9 0x00007fe823d6632c in qSlicerCoreApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007fe823f36a26 in qSlicerApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007fe823f37c25 in qSlicerApplication::qSlicerApplication (this=0x7ffc3c2f00c0, _argc=@0x7ffc3c2f006c: 1, _argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056387ef18fc6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056387ef192fe in main (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [2] startup segmentation fault when built against Qt 5.15: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007f7ed11fa94c in getrn () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #2 0x00007f7ed11fac7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #3 0x00007f7ed1145d94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #4 0x00007f7eb00cc392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007f7ec4d4647f in __pthread_once_slow (once_control=0x7f7eb0128928, init_routine=0x7f7eb00cc2a0) at pthread_once.c:116 #6 0x00007f7eab60d78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007f7eb00cc57b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007f7ed0d499f7 in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl.cpp:1954 #9 0x00007f7edd7a5780 in qSlicerCoreApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007f7ede3ac0dc in qSlicerApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007f7ede3ad2db in qSlicerApplication::qSlicerApplication (this=0x7ffee9ad17b0, _argc=@0x7ffee9ad175c: 1, _argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056465aebefa6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056465aebf2de in main (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [3] macOS error message reported on test failure: qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_ssl qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_crypto qt.network.ssl: QSslSocket: cannot resolve ASN1_STRING_get0_data qt.network.ssl: QSslSocket: cannot resolve EVP_CIPHER_CTX_reset qt.network.ssl: QSslSocket: cannot resolve EVP_PKEY_up_ref qt.network.ssl: QSslSocket: cannot resolve RSA_bits qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_new_null qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_push qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_num qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_pop_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_value qt.network.ssl: QSslSocket: cannot resolve DH_get0_pqg qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_options qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_ciphersuites qt.network.ssl: QSslSocket: cannot resolve SSL_set_psk_use_session_callback qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_is_resumable qt.network.ssl: QSslSocket: cannot resolve SSL_get_client_random qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_get_master_key qt.network.ssl: QSslSocket: cannot resolve SSL_session_reused qt.network.ssl: QSslSocket: cannot resolve SSL_set_options qt.network.ssl: QSslSocket: cannot resolve TLS_method qt.network.ssl: QSslSocket: cannot resolve TLS_client_method qt.network.ssl: QSslSocket: cannot resolve TLS_server_method qt.network.ssl: QSslSocket: cannot resolve X509_up_ref qt.network.ssl: QSslSocket: cannot resolve X509_STORE_CTX_get0_chain qt.network.ssl: QSslSocket: cannot resolve X509_getm_notBefore qt.network.ssl: QSslSocket: cannot resolve X509_getm_notAfter qt.network.ssl: QSslSocket: cannot resolve X509_get_version qt.network.ssl: QSslSocket: cannot resolve X509_STORE_set_ex_data qt.network.ssl: QSslSocket: cannot resolve X509_STORE_get_ex_data qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version_num qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version qt.network.ssl: Incompatible version of OpenSSL [SSL] SSL support disabled - Failed to load SSL library ! [SSL] Failed to load Slicer.crt Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
jcfr
added a commit
that referenced
this issue
Jun 23, 2020
This commit updates OpenSSL external project to default to OpenSSL 1.1.1g when Slicer is built against Qt >= 5.12.4. It enables parallel build when building against OpenSSL >= 1.1.0 It uses OpenSSL 1.1.1g source archives including a fix for building on macOS against zlib. See pull request 12238 at https://github.com/openssl/openssl/pull/ It fixes the following issues reported when building against older OpenSSL version: * Ubuntu 18.04: fixes segmentation fault on startup when Slicer is built against Qt 5.12.9 or Qt 5.15. See [1] and [2] * macOS 10.13.6: fixes OpenSSL errors associated with the following tests: - py_nomainwindow_qSlicerEditorModuleGenericTest (still failing but not related to OpenSSL) - py_nomainwindow_test_slicer_environment (still failing but not related to OpenSSL) - py_StandaloneEditorWidgetTest (still failing but not related to OpenSSL) - py_SurfaceToolbox (still failing but not related to OpenSSL) - py_ThresholdThreadingTest (still failing but not related to OpenSSL) - py_WebEngine - qSlicerSequencesModuleWidgetGenericTest - qSlicerSslTest Examples of error messages listed in [3] [1] startup segmentation fault when built against Qt 5.12.9: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007fe8026e194c in getrn () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #2 0x00007fe8026e1c7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #3 0x00007fe80262cd94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug-5.12.9/OpenSSL/libcrypto.so.1.0.0 #4 0x00007fe7fc104392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007fe8186d947f in __pthread_once_slow (once_control=0x7fe7fc160928, init_routine=0x7fe7fc1042a0) at pthread_once.c:116 #6 0x00007fe7f589c78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007fe7fc10457b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007fe81d1513ef in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl11.cpp:92 #9 0x00007fe823d6632c in qSlicerCoreApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007fe823f36a26 in qSlicerApplicationPrivate::init (this=0x56387f5c2700) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007fe823f37c25 in qSlicerApplication::qSlicerApplication (this=0x7ffc3c2f00c0, _argc=@0x7ffc3c2f006c: 1, _argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056387ef18fc6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056387ef192fe in main (argc=1, argv=0x7ffc3c2f0238) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [2] startup segmentation fault when built against Qt 5.15: #0 __strcmp_avx2 () at ../sysdeps/x86_64/multiarch/strcmp-avx2.S:101 #1 0x00007f7ed11fa94c in getrn () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #2 0x00007f7ed11fac7e in lh_insert () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #3 0x00007f7ed1145d94 in OBJ_NAME_add () from /path/to/Slicer-SuperBuild-Debug/OpenSSL/libcrypto.so.1.0.0 #4 0x00007f7eb00cc392 in ?? () from /lib/x86_64-linux-gnu/libssl.so.1.1 #5 0x00007f7ec4d4647f in __pthread_once_slow (once_control=0x7f7eb0128928, init_routine=0x7f7eb00cc2a0) at pthread_once.c:116 #6 0x00007f7eab60d78d in CRYPTO_THREAD_run_once () from /lib/x86_64-linux-gnu/libcrypto.so.1.1 #7 0x00007f7eb00cc57b in OPENSSL_init_ssl () from /lib/x86_64-linux-gnu/libssl.so.1.1 #8 0x00007f7ed0d499f7 in QSslSocketPrivate::ensureLibraryLoaded () at ssl/qsslsocket_openssl.cpp:1954 #9 0x00007f7edd7a5780 in qSlicerCoreApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTCore/qSlicerCoreApplication.cxx:265 #10 0x00007f7ede3ac0dc in qSlicerApplicationPrivate::init (this=0x56465d030b00) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:203 #11 0x00007f7ede3ad2db in qSlicerApplication::qSlicerApplication (this=0x7ffee9ad17b0, _argc=@0x7ffee9ad175c: 1, _argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTGUI/qSlicerApplication.cxx:357 #12 0x000056465aebefa6 in (anonymous namespace)::SlicerAppMain (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Applications/SlicerApp/Main.cxx:40 #13 0x000056465aebf2de in main (argc=1, argv=0x7ffee9ad1928) at /path/to/Slicer/Base/QTApp/qSlicerApplicationMainWrapper.cxx:56 [3] macOS error message reported on test failure: qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_ssl qt.network.ssl: QSslSocket: cannot resolve OPENSSL_init_crypto qt.network.ssl: QSslSocket: cannot resolve ASN1_STRING_get0_data qt.network.ssl: QSslSocket: cannot resolve EVP_CIPHER_CTX_reset qt.network.ssl: QSslSocket: cannot resolve EVP_PKEY_up_ref qt.network.ssl: QSslSocket: cannot resolve RSA_bits qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_new_null qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_push qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_num qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_pop_free qt.network.ssl: QSslSocket: cannot resolve OPENSSL_sk_value qt.network.ssl: QSslSocket: cannot resolve DH_get0_pqg qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_options qt.network.ssl: QSslSocket: cannot resolve SSL_CTX_set_ciphersuites qt.network.ssl: QSslSocket: cannot resolve SSL_set_psk_use_session_callback qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_is_resumable qt.network.ssl: QSslSocket: cannot resolve SSL_get_client_random qt.network.ssl: QSslSocket: cannot resolve SSL_SESSION_get_master_key qt.network.ssl: QSslSocket: cannot resolve SSL_session_reused qt.network.ssl: QSslSocket: cannot resolve SSL_set_options qt.network.ssl: QSslSocket: cannot resolve TLS_method qt.network.ssl: QSslSocket: cannot resolve TLS_client_method qt.network.ssl: QSslSocket: cannot resolve TLS_server_method qt.network.ssl: QSslSocket: cannot resolve X509_up_ref qt.network.ssl: QSslSocket: cannot resolve X509_STORE_CTX_get0_chain qt.network.ssl: QSslSocket: cannot resolve X509_getm_notBefore qt.network.ssl: QSslSocket: cannot resolve X509_getm_notAfter qt.network.ssl: QSslSocket: cannot resolve X509_get_version qt.network.ssl: QSslSocket: cannot resolve X509_STORE_set_ex_data qt.network.ssl: QSslSocket: cannot resolve X509_STORE_get_ex_data qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version_num qt.network.ssl: QSslSocket: cannot resolve OpenSSL_version qt.network.ssl: Incompatible version of OpenSSL [SSL] SSL support disabled - Failed to load SSL library ! [SSL] Failed to load Slicer.crt Co-authored-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
jcfr
added a commit
to jcfr/Slicer
that referenced
this issue
Jul 21, 2023
This commit fixes a regression introduced in 530b8fc (ENH: Update Slicer Controller adding Thick Slab Reconstruction (Slicer#7021)) and fixes these tests: - qMRMLSliceWidgetTest1_vol_and_cube.mrml - qMRMLVolumeThresholdWidgetTest2_vol_and_cube.mrml The problem was that in the context of these tests the call to vtkMRMLSliceLayerLogic::SetSliceNode happens after "UpdateSliceCompositeNode" For reference the sequence of calls lead to the segfault for test "qMRMLSliceWidgetTest1_vol_and_cube" was the following: Slicer#20 main(int, char**) (ac=<optimized out>, av=<optimized out>) Slicer#19 qMRMLSliceWidgetTest1(int, char**) Slicer#18 qMRMLSliceWidget::setMRMLSliceNode(vtkMRMLSliceNode*) Slicer#17 qMRMLSliceControllerWidget::setMRMLSliceNode(vtkMRMLSliceNode*) (this= Slicer#16 vtkMRMLSliceLogic::SetSliceNode(vtkMRMLSliceNode*) Slicer#15 vtkMRMLSliceLogic::UpdateSliceCompositeNode() (this=0x56366358b080) Slicer#14 vtkMRMLSliceLogic::UpdatePipeline() (this=0x56366358b080) Slicer#13 vtkMRMLSliceLogic::SetSliceExtentsToSliceNode() (this=0x56366358b080) Slicer#12 vtkMRMLSliceNode::UpdateMatrices() (this=0x563662f41e00) Slicer#11 vtkMRMLNode::EndModify(int) (previousDisableModifiedEventState=0, this=0x563662f41e00) Slicer#10 vtkMRMLNode::InvokePendingModifiedEvent() (this=0x563662f41e00) Slicer#9 vtkSubjectHelper::InvokeEvent(unsigned long, void*, vtkObject*) Slicer#8 vtkCallbackCommand::Execute(vtkObject*, unsigned long, void*) Slicer#7 vtkEventBroker::ProcessEvent(vtkObservation*, vtkObject*, unsigned long, void*) (this=0x563662ddf450, observation=0x5636638d4170, caller=<optimized out>, eid=33, callData=0x0) Slicer#6 vtkEventBroker::InvokeObservation(vtkObservation*, unsigned long, void*) Slicer#5 vtkCallbackCommand::Execute(vtkObject*, unsigned long, void*) Slicer#4 vtkMRMLAbstractLogic::MRMLNodesCallback(vtkObject*, unsigned long, void*, void*) Slicer#3 vtkMRMLAbstractLogic::MRMLNodesCallback(vtkObject*, unsigned long, void*, void*) (callData=0x0, clientData=0x56366358b080, eid=33, caller=0x563662f41e00) Slicer#2 vtkMRMLSliceLogic::OnMRMLNodeModified(vtkMRMLNode*) #1 vtkMRMLSliceLogic::UpdateReconstructionSlab(vtkMRMLSliceLogic*, vtkMRMLSliceLayerLogic*)
jcfr
added a commit
that referenced
this issue
Jul 21, 2023
This commit fixes a regression introduced in 530b8fc (ENH: Update Slicer Controller adding Thick Slab Reconstruction (#7021)) and fixes these tests: - qMRMLSliceWidgetTest1_vol_and_cube.mrml - qMRMLVolumeThresholdWidgetTest2_vol_and_cube.mrml The problem was that in the context of these tests the call to vtkMRMLSliceLayerLogic::SetSliceNode happens after "UpdateSliceCompositeNode" For reference the sequence of calls lead to the segfault for test "qMRMLSliceWidgetTest1_vol_and_cube" was the following: #20 main(int, char**) (ac=<optimized out>, av=<optimized out>) #19 qMRMLSliceWidgetTest1(int, char**) #18 qMRMLSliceWidget::setMRMLSliceNode(vtkMRMLSliceNode*) #17 qMRMLSliceControllerWidget::setMRMLSliceNode(vtkMRMLSliceNode*) (this= #16 vtkMRMLSliceLogic::SetSliceNode(vtkMRMLSliceNode*) #15 vtkMRMLSliceLogic::UpdateSliceCompositeNode() (this=0x56366358b080) #14 vtkMRMLSliceLogic::UpdatePipeline() (this=0x56366358b080) #13 vtkMRMLSliceLogic::SetSliceExtentsToSliceNode() (this=0x56366358b080) #12 vtkMRMLSliceNode::UpdateMatrices() (this=0x563662f41e00) #11 vtkMRMLNode::EndModify(int) (previousDisableModifiedEventState=0, this=0x563662f41e00) #10 vtkMRMLNode::InvokePendingModifiedEvent() (this=0x563662f41e00) #9 vtkSubjectHelper::InvokeEvent(unsigned long, void*, vtkObject*) #8 vtkCallbackCommand::Execute(vtkObject*, unsigned long, void*) #7 vtkEventBroker::ProcessEvent(vtkObservation*, vtkObject*, unsigned long, void*) (this=0x563662ddf450, observation=0x5636638d4170, caller=<optimized out>, eid=33, callData=0x0) #6 vtkEventBroker::InvokeObservation(vtkObservation*, unsigned long, void*) #5 vtkCallbackCommand::Execute(vtkObject*, unsigned long, void*) #4 vtkMRMLAbstractLogic::MRMLNodesCallback(vtkObject*, unsigned long, void*, void*) #3 vtkMRMLAbstractLogic::MRMLNodesCallback(vtkObject*, unsigned long, void*, void*) (callData=0x0, clientData=0x56366358b080, eid=33, caller=0x563662f41e00) #2 vtkMRMLSliceLogic::OnMRMLNodeModified(vtkMRMLNode*) #1 vtkMRMLSliceLogic::UpdateReconstructionSlab(vtkMRMLSliceLogic*, vtkMRMLSliceLayerLogic*)
jcfr
added a commit
to jcfr/Slicer
that referenced
this issue
Jul 3, 2024
List of ITK changes:
```
$ git shortlog --group=author --group=trailer:co-authored-by aacaefd63..e18566d53 --no-merges
Matt McCormick (2):
[Backport] BUG: Update HDF5 name mangled symbols
[Backport] DOC: Improve itk_hdf5_mangle.h.in instructions
```
This is expected to address errors like the following reported when
importing itk python package from a Linux Preview build of Slicer:
```
Thread 1 "SlicerApp-real" received signal SIGSEGV, Segmentation fault.
0x00007f34d7a3d58f in H5::Exception::~Exception() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Slicer-5.7/libitkhdf5_cpp-shared-5.4.so.1
(gdb) where
#0 0x00007f34d7a3d58f in H5::Exception::~Exception() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Slicer-5.7/libitkhdf5_cpp-shared-5.4.so.1
#1 0x00007f34fc8fdaff in ?? ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Slicer-5.7/libITKCommon-5.4.so.1
Slicer#2 0x00007f30deed443c in itk::HDF5TransformIOTemplate<double>::Read() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/_ITKIOTransformHDF5Python.so
Slicer#3 0x00007f30e50787a3 in itk::TransformFileReaderTemplate<double>::Update() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/_ITKIOTransformBasePython.so
Slicer#4 0x00007f30e504c7cc in ?? ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/_ITKIOTransformBasePython.so
Slicer#5 0x00007f34ecb02cf3 in ?? () from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Python/lib/libpython3.9.so
Slicer#6 0x00007f34eca76597 in ?? () from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Python/lib/libpython3.9.so
Slicer#7 0x00007f34eca7d070 in _PyEval_EvalFrameDefault ()
```
jcfr
added a commit
that referenced
this issue
Jul 3, 2024
List of ITK changes:
```
$ git shortlog --group=author --group=trailer:co-authored-by aacaefd63..e18566d53 --no-merges
Matt McCormick (2):
[Backport] BUG: Update HDF5 name mangled symbols
[Backport] DOC: Improve itk_hdf5_mangle.h.in instructions
```
This is expected to address errors like the following reported when
importing itk python package from a Linux Preview build of Slicer:
```
Thread 1 "SlicerApp-real" received signal SIGSEGV, Segmentation fault.
0x00007f34d7a3d58f in H5::Exception::~Exception() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Slicer-5.7/libitkhdf5_cpp-shared-5.4.so.1
(gdb) where
#0 0x00007f34d7a3d58f in H5::Exception::~Exception() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Slicer-5.7/libitkhdf5_cpp-shared-5.4.so.1
#1 0x00007f34fc8fdaff in ?? ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Slicer-5.7/libITKCommon-5.4.so.1
#2 0x00007f30deed443c in itk::HDF5TransformIOTemplate<double>::Read() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/_ITKIOTransformHDF5Python.so
#3 0x00007f30e50787a3 in itk::TransformFileReaderTemplate<double>::Update() ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/_ITKIOTransformBasePython.so
#4 0x00007f30e504c7cc in ?? ()
from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/_ITKIOTransformBasePython.so
#5 0x00007f34ecb02cf3 in ?? () from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Python/lib/libpython3.9.so
#6 0x00007f34eca76597 in ?? () from /path/to/Slicer-5.7.0-2024-06-04-linux-amd64/bin/../lib/Python/lib/libpython3.9.so
#7 0x00007f34eca7d070 in _PyEval_EvalFrameDefault ()
```
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