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refactor: GitHub actions #332

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merged 1 commit into from
Nov 5, 2021
Merged

refactor: GitHub actions #332

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28 changes: 9 additions & 19 deletions .github/workflows/yaml-validation.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,18 +5,12 @@ on: [push, pull_request]
jobs:
yaml-validation:
runs-on: ubuntu-latest

steps:

- name: Checkout
uses: actions/checkout@v2

- name: Cache model folder
id: cache-model-files
uses: actions/cache@v2
with:
path: model
key: ${{ github.sha }}

- name: YAML Lint
uses: ibiqlik/action-yamllint@v1.0.0
with:
Expand All @@ -27,16 +21,12 @@ jobs:
## Return non-zero exit code on warnings as well as errors
# strict: # optional, default is false

- name: Set up Python 3
uses: actions/setup-python@v2
with:
python-version: '3.x'

- name: Install GLPK, dependency for swiglpk
run: sudo apt-get install glpk-utils libglpk-dev

- name: Test import with cobrapy and consistency with annotation files
run: |
pip install -U pip
pip install cobra
python code/test/sanityCheck.py
uses: addnab/docker-run-action@v3
with:
image: opencobra/memote:latest
options: -v ${{ github.workspace }}:/opt
shell: bash
run: |
cd /opt
python code/test/sanityCheck.py