Rat 1.4

[haowang-bioinfo]

Main improvements in this PR:

• Fixes (PR 460):
  • fix: correct MAM03882 annotation, as reported in Mouse-GEM #21
• Fixes (PR 429):
  • feat: add Acod1(Irg1) gene and associated reaction, as discussed in Mouse-GEM #20
• Features (commit f5f7845):
  • feat: update ortholog pairs from Alliance of Genomes to ver 5.3.0
• Style (commit cee1e29):
  • change human-rat ortholog file from json to tsv, as discussed in Mouse-GEM #15

[mihai-sysbio]

It would be great to note somewhere which version of Human-GEM this is based on, perhaps in the README.

[haowang-bioinfo]

It would be great to note somewhere which version of Human-GEM this is based on, perhaps in the README.

I believe you've asked this question before, would be good fix this somehow

[mihai-sysbio]

I believe you've asked this question before, would be good fix this somehow

Indeed I have - but I still can't find where the Human-GEM dependency is listed. I'm asking about this since I know there have been quite a few releases improving Human-GEM since the previous release of Rat-GEM.

[haowang-bioinfo]

I still can't find where the Human-GEM dependency is listed

the quick answer is the dependency file is in main branch only

[haowang-bioinfo]

probably we should replace this step with an automatic approach via a centralized script in HumanGEM