Generate publications list from BibTeX file #2155
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: "master" | |
| tags: ["*"] | |
| pull_request: | |
| paths: | |
| - .github/workflows/tests.yml | |
| - requirements/** | |
| - resources/** | |
| - src/tlo/** | |
| - src/scripts/profiling/scale_run.py | |
| - src/scripts/profiling/shared.py | |
| - tests/** | |
| - pyproject.toml | |
| - tox.ini | |
| schedule: | |
| - cron: 0 0 * * * | |
| # Force cancellation of in-progress workflows if changes are made to | |
| # the HEAD of the branch the workflow is currently running on. | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| # master branch will be allowed to have pending jobs | |
| # https://stackoverflow.com/a/70972844 | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/master' }} | |
| env: | |
| LD_PRELOAD: /lib/x86_64-linux-gnu/libSegFault.so | |
| SEGFAULT_SIGNALS: all | |
| jobs: | |
| gen-test-matrix: | |
| name: Find test files | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # No tests should be under LFS so no need to fetch LFS files | |
| lfs: false | |
| - id: set-matrix | |
| name: Set matrix | |
| run: | | |
| set -e | |
| shopt -s globstar | |
| # Find all test files and generate their list in JSON format | |
| VAR_FILES="{\"include\":[" | |
| for file in tests/**/test_*.py; do | |
| VAR_FILES="${VAR_FILES}{\"file\":\"${file}\"}," | |
| done | |
| VAR_FILES="${VAR_FILES}]}" | |
| echo $VAR_FILES | |
| echo "matrix=${VAR_FILES}" >> $GITHUB_OUTPUT | |
| test: | |
| needs: gen-test-matrix | |
| name: Test ${{ matrix.file }} | |
| runs-on: [self-hosted, test] | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.gen-test-matrix.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: System info | |
| run: | | |
| set -x | |
| python3 --version | |
| uname -a | |
| lsb_release -a | |
| virtualenv --version | |
| pip --version | |
| tox --version | |
| - name: Test with tox | |
| run: | | |
| tox -v -e py311 -- pytest --show-capture=no -vv "${{ matrix.file }}" --junit-xml="${{ matrix.file }}.results.xml" | |
| - name: Generate test report | |
| if: always() | |
| uses: pmeier/pytest-results-action@fc6576eced1f411ea48ab10e917d9cfce2960e29 | |
| with: | |
| path: ${{ matrix.file }}.results.xml | |
| summary: true | |
| display-options: fEX | |
| title: Results for ${{ matrix.file }} |