Enable all pycodestyle and isort rules in Ruff and fix violations #2237
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| push: | |
| branches: "master" | |
| tags: ["*"] | |
| pull_request: | |
| paths: | |
| - .github/workflows/tests.yml | |
| - requirements/** | |
| - resources/** | |
| - src/tlo/** | |
| - src/scripts/profiling/scale_run.py | |
| - src/scripts/profiling/shared.py | |
| - tests/** | |
| - pyproject.toml | |
| - tox.ini | |
| schedule: | |
| - cron: 0 0 * * * | |
| # Force cancellation of in-progress workflows if changes are made to | |
| # the HEAD of the branch the workflow is currently running on. | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| # master branch will be allowed to have pending jobs | |
| # https://stackoverflow.com/a/70972844 | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/master' }} | |
| env: | |
| LD_PRELOAD: /lib/x86_64-linux-gnu/libSegFault.so | |
| SEGFAULT_SIGNALS: all | |
| jobs: | |
| gen-test-matrix: | |
| name: Find test files | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # No tests should be under LFS so no need to fetch LFS files | |
| lfs: false | |
| - id: set-matrix | |
| name: Set matrix | |
| run: | | |
| set -e | |
| shopt -s globstar | |
| # Find all test files and generate their list in JSON format | |
| VAR_FILES="{\"include\":[" | |
| for file in tests/**/test_*.py; do | |
| VAR_FILES="${VAR_FILES}{\"file\":\"${file}\"}," | |
| done | |
| VAR_FILES="${VAR_FILES}]}" | |
| echo $VAR_FILES | |
| echo "matrix=${VAR_FILES}" >> $GITHUB_OUTPUT | |
| test: | |
| needs: gen-test-matrix | |
| name: Test ${{ matrix.file }} | |
| runs-on: [self-hosted, test] | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.gen-test-matrix.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: System info | |
| run: | | |
| set -x | |
| python3 --version | |
| uname -a | |
| lsb_release -a | |
| virtualenv --version | |
| pip --version | |
| tox --version | |
| - name: Test with tox | |
| run: | | |
| tox -v -e py311 -- pytest --show-capture=no -vv "${{ matrix.file }}" --junit-xml="${{ matrix.file }}.results.xml" | |
| - name: Generate test report | |
| if: always() | |
| uses: pmeier/pytest-results-action@fc6576eced1f411ea48ab10e917d9cfce2960e29 | |
| with: | |
| path: ${{ matrix.file }}.results.xml | |
| summary: true | |
| display-options: fEX | |
| title: Results for ${{ matrix.file }} |