Reduce viral load testing for PLHIV on ART (#1520)

* add new parameter to scale-up VMMC from 2019 onwards to match reported data * reduce viral load testing to occur every 2 years * remove mihpsa sheet in ResourceFile_HIV.xlsx * merge in PR 1456 - increase VMMC after 2019 * merge in PR 1456 - increase VMMC after 2019 * address comments in PR #1456 * revert analysis script * remove ResourceFile_HIV.xlsx and add new parameter into csv file * remove references to ResourceFile_HIV.xlsx * add parameter increase_in_prob_circ_2019 to parameters.csv --------- Co-authored-by: Tim Hallett <39991060+tbhallett@users.noreply.github.com>
UCL · Dec 17, 2024 · 3c407a4 · 3c407a4
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commit 3c407a4
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diff --git a/resources/ResourceFile_HIV/parameters.csv b/resources/ResourceFile_HIV/parameters.csv
diff --git a/src/scripts/hiv/projections_jan2023/calibration_script.py b/src/scripts/hiv/projections_jan2023/calibration_script.py
@@ -69,7 +69,7 @@ def __init__(self):
         self.runs_per_draw = runs_per_draw
 
         self.sampled_parameters = pd.read_excel(
-            os.path.join(self.resources, "../../../../resources/ResourceFile_HIV.xlsx"),
+            os.path.join(self.resources, "../../../../resources/ResourceFile_HIV/parameters.csv"),
             sheet_name="LHC_samples",
         )
 

diff --git a/src/scripts/hiv/projections_jan2023/output_plots.py b/src/scripts/hiv/projections_jan2023/output_plots.py
@@ -90,7 +90,7 @@ def make_plot(model=None, data_mid=None, data_low=None, data_high=None, title_st
 data_tb_ntp = data_tb_ntp.drop(columns=["year"])
 
 # HIV resourcefile
-xls = pd.ExcelFile(resourcefilepath / "ResourceFile_HIV.xlsx")
+xls = pd.ExcelFile(resourcefilepath / "ResourceFile_HIV/parameters.csv")
 
 # HIV UNAIDS data
 data_hiv_unaids = pd.read_excel(xls, sheet_name="unaids_infections_art2021")