Integrating weather events into TLO #1604

RachelMurray-Watson · 2025-03-05T10:28:19Z

This PR aims to integrate weather-mediated disruptions into the TLO model. As the disruptions are mediated at the level of a facility, each individual in the model must be "assigned" to facilities of different levels within their region of interest.

Assumptions:

Have the projected disruptions to ANC care; assume this translates to disruptions in other services
Mode 1 (?)
Disruption happens at point of healthcare provision, not in healthcare seeking behaviour
There's a (weighted) coin toss at the point of processing the HSI event to see if the event goes ahead...

Issues (as they arise):

I've tried to assign a facility to an individual, but then this may not match the one assigned to the HSI event...

…by facility/month/year/service, from the data generated in the ANC project (Desktop/Climate_change_health/Data)

…ity in the MasterFacility list

'Which level 1 facility is "used" by individual.', categories = ['SET_AT_RUNTIME']),

…slow

…zable). However, other tests are still failing

…s added.

Also set climate_sspr, climate_model_ensemble_model, and services_affected_precip as parameters at init (which can be changed at the point of setting up the simulation)

Has setting of parameters

RachelMurray-Watson added 28 commits March 3, 2025 09:48

Experiments

3c404d1

File for formatting the projected precipitation-mediated disruptions …

5a07093

…by facility/month/year/service, from the data generated in the ANC project (Desktop/Climate_change_health/Data)

Reformatted to allow for other services

56153df

Building class that caculates the service availability for each facil…

6b13b8d

…ity in the MasterFacility list

Fixed typo

62cce7c

Started adding ewe

b001afb

Added but not set 'facility_used_level_1': Property(Types.CATEGORICAL,

6137251

'Which level 1 facility is "used" by individual.', categories = ['SET_AT_RUNTIME']),

Assigned the closest facility based on distance... but could be very …

4efe1f8

…slow

Unsure if it is needed?

54b95e6

Typo in function

290f5a3

Also fixed accessing dataframe and the column names in the data

b6a021b

Also fixed accessing dataframe and the column names in the data

2e7d5f3

Dropping coordinates as causing tests to fail (point not json seriali…

e907118

…zable). However, other tests are still failing

renamed mislabelled property

8c330a5

Removed print

e46e556

Still needs the properties of services disrupted/projected disruption…

d7211d7

…s added.

Read in the projected precipitation-mediated disruptions for ANC.

559077b

Also set climate_sspr, climate_model_ensemble_model, and services_affected_precip as parameters at init (which can be changed at the point of setting up the simulation)

Resource files for precipitation-mediated disruptions

8bc31ed

test

1c73859

changed path to save files

9b0dc6c

removed the masterfacility check as thse are aggregated facilities

19b3dd8

updated to include the facility name

8b43cfc

changed default to none

ae88c36

Added assertion checks for type of model and scenario

812fd51

Initial test of climate inclusion.

104e238

Has setting of parameters

Only have data for year > 2025.

22ba45a

Fixed typo (omitting module when calling services affected)

efbbdef

test

73fd950

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Integrating weather events into TLO #1604

Integrating weather events into TLO #1604

RachelMurray-Watson commented Mar 5, 2025 •

edited

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Integrating weather events into TLO #1604

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Integrating weather events into TLO #1604

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RachelMurray-Watson commented Mar 5, 2025 • edited Loading

RachelMurray-Watson commented Mar 5, 2025 •

edited

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