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OHRI-2051 update metadata to use config in covid esm #1735

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Jan 11, 2024
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5 changes: 2 additions & 3 deletions packages/esm-covid-app/src/api/api.ts
Original file line number Diff line number Diff line change
@@ -1,10 +1,9 @@
import { openmrsFetch } from '@openmrs/esm-framework';
import { covidOutcomesCohortUUID } from '../constants';
import { openmrsFetch, useConfig } from '@openmrs/esm-framework';

const BASE_WS_API_URL = '/ws/rest/v1/';
const BASE_FHIR_API_URL = '/ws/fhir2/R4/';

export function fetchPatientCovidOutcome() {
export function fetchPatientCovidOutcome(covidOutcomesCohortUUID) {
return openmrsFetch(`/ws/rest/v1/reportingrest/cohort/${covidOutcomesCohortUUID}`).then(({ data }) => {
if (data.members?.length) {
let patientRefs = data.members.map((member) => {
Expand Down
90 changes: 90 additions & 0 deletions packages/esm-covid-app/src/config-schema.ts
Original file line number Diff line number Diff line change
@@ -0,0 +1,90 @@
import { Type } from '@openmrs/esm-framework';

export const configSchema = {
encounterTypes: {
_type: Type.Object,
_description: 'Encounter type UUIDs for Covid.',
_default: {
covid_Assessment_EncounterUUID: '253a43d3-c99e-415c-8b78-ee7d4d3c1d54',
covidLabOrderEncounterType_UUID: 'a77d3e7f-5c8f-4074-a207-77a70e197b0c',
covidSampleCollection: '3ee00481-50e1-41c3-bfcb-7e6d6a8722fb',
covidVaccinationEncounterUUID: '5b37ce7a-c55e-4226-bdc8-5af04025a6de',
},
},
obsConcepts: {
_type: Type.Object,
_description: 'List of observation concept UUIDs related to Covid.',
_default: {
returnVisitDateConcept: '5096AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
dateSpecimenCollected: '159951AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidSpecimenCollectiDate_UUID: '159951AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidTypeofTestConcept_UUID: '069f6dfe-88c1-4a45-a894-0d99549c8718',
covidSpecimenCollectionDate_UUID: '159951AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidOutcomeUUID: 'a845f3e6-4432-4de4-9fff-37fa270b1a06',
covidTestType: '069f6dfe-88c1-4a45-a894-0d99549c8718',
covidOutcome: 'a845f3e6-4432-4de4-9fff-37fa270b1a06',
rapidAntigenResultDate: 'af159c77-bc5d-46dd-90d9-bcbffb22267f',
covidTreatementOutConcept_UUID: 'a845f3e6-4432-4de4-9fff-37fa270b1a06',
covidRapidTestResultDate_UUID: 'af159c77-bc5d-46dd-90d9-bcbffb22267f',
pcrTestResultDate: '4a77ab44-0323-490e-96be-e168c0e5c9de',
finalCovid19Result: '5da5c21b-969f-41bd-9091-e40d4c707544',
covidOutcomesCohortUUID: 'afb0d950-48fd-44d7-ae2c-79615cd125f0',
covidDiagnorticPcrResultDate_UUID: '4a77ab44-0323-490e-96be-e168c0e5c9de',
htsRetrospectiveEncounterType: '79c1f50f-f77d-42e2-ad2a-d29304dde2fe',
htsRetrospectiveType: '79c1f50f-f77d-42e2-ad2a-d29304dde2fe',
pcrTestResult: '3f4ee14b-b4ab-4597-9fe9-406883b63d76',
covidReasonsForTestingConcep_UUID: 'ae46f4b1-c15d-4bba-ab41-b9157b82b0ce',
covidDiagnosticPcrResult_UUID: '3f4ee14b-b4ab-4597-9fe9-406883b63d76',
covidTestResultUUID: '3f4ee14b-b4ab-4597-9fe9-406883b63d76',
covidPatientStatusUUID: 'de3bc9b7-05b5-41b6-a38d-8d2eec646c4f',
covidSARS_TestResultConcept_UUID: '89feed9c-1dd9-477a-ab1c-86f5f75f6762',
covidSARS_TestResult_Name_UUID: '0961651c-d52e-41dd-957a-94b9ce08e4eb',
covidReasonsForTestingUUID: '5793ad0f-d726-4918-a1b5-f25f4fb2b857',
covidPatientStatusConcept_UUID: 'de3bc9b7-05b5-41b6-a38d-8d2eec646c4f',
covidTreatmenOutConceptName_UUID: '28d43e48-3673-4671-a6b1-3ed45fdfcba6',
covidSpecimentTestDate_UUID: '499df97a-2a34-4562-946a-3c4d5608b67f',
covidPresentSymptonsConcept_UUID: '244b0dc0-eb1b-46ae-b62a-f580345d4f46',
covidSymptomsPresentation: 'de3bc9b7-05b5-41b6-a38d-8d2eec646c4f',
covidComorbidityPresentConcept_UUID: '166020AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidUnderComorbidityConcept_UUID: '0651869c-6e90-48d6-b25c-406270c76bee',
covidVaccinationStatusConcept_UUID: 'de3bc9b7-05b5-41b6-a38d-8d2eec646c4f',
covidPresentSymptonsName_UUID: '12568215-ae1c-42ec-b7e8-8818d2761f46',
covidEncounterDateTime_UUID: '160753AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidLabOrderDate_UUID: '162078AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
rapidTestResult: 'cbcbb029-f11f-4437-9d53-1d0f0a170433',
covidSpecimentTypeConcept_UUID: 'ae127f82-1861-4165-ac81-8554e5a3aac4',
covidTestResultConcept_UUID: '161934AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidTestStatusConcept_UUID: '6681366c-2174-489a-b951-13a1404935bf',
covidTestResultDate_UUID: '163724AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidVaccinationStatusUUID: '40cb816f-797b-4cb4-a9fb-2727b2373623',
covidVaccination1stDoseDateConcept_UUID: 'c85eb064-5ef7-4ac6-8e56-4749bd58df44',
covidVaccination2ndDoseDateConcept_UUID: '42ee7f5c-fdd3-48c1-8d3a-5c6e248e6cb9',
covidVaccinationTypeConcept_UUID: 'a31d1148-bbcc-4ad6-a015-8359d66bcfdc',
covidVaccinationAdministeredConcept_UUID: '1410AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidVaccinationNextVacinationDateConcept_UUID: '5096AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidVaccinationDose_UUID: '6ec64cb3-e710-4d3e-9db4-38c135966a45',
covidVaccineAdministeredConcept_UUID: 'e41fbe17-4aee-4a44-950b-6676d6e0ede2',
covidVaccineConcept_UUID: '0cc868bd-e9dd-4b59-b278-f923afe22d82',
covidVaccineSeriesConcept_UUID: '45b3959d-f897-4e01-b6e5-16ef6ae0a687',
},
},
cohorts: {
_type: Type.Object,
_description: 'Covid Cohort uuid.',
_default: {
clientsEnrolledForTb: '98fd11ba-cb4d-46f7-9b82-40d49949c7ef',
covidOutcomesCohortUUID: 'afb0d950-48fd-44d7-ae2c-79615cd125f0',
covid19PositiveClients: '1523b1e5-b6d0-44fb-bd9e-c91bfefb4d1c',
clientsAssessedForCovid: 'ec373b01-4ba3-488e-a322-9dd6a50cfdf7',
covidClientsWithPendingLabResults: '166aa2b1-ce55-4d16-9643-ca9d2e2694ea',
clientsWithoutCovidOutcomes: 'db6c4a18-28c6-423c-9da0-58d19e364a7f',
allCovidAssessments: 'ec373b01-4ba3-488e-a322-9dd6a50cfdf7',
covidVaccinatedClients: 'b5d52da9-10c2-43af-ae23-552acc5e445b',
},
},
};

export interface ConfigObject {
encounterTypes: Object;
obsConcepts: Object;
}
85 changes: 0 additions & 85 deletions packages/esm-covid-app/src/constants.ts

This file was deleted.

3 changes: 2 additions & 1 deletion packages/esm-covid-app/src/index.ts
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ import {
} from './dashboard.meta';
import { createOHRIDashboardLink, OHRIHome, OHRIWelcomeSection } from '@ohri/openmrs-esm-ohri-commons-lib';
import { createDashboardGroup, createDashboardLink } from '@openmrs/esm-patient-common-lib';
import { configSchema } from './config-schema';

export const importTranslation = require.context('../translations', false, /.json$/, 'lazy');

Expand All @@ -22,7 +23,7 @@ const options = {
};

export function startupApp() {
defineConfigSchema(moduleName, {});
defineConfigSchema(moduleName, configSchema);
}

export const covidPatientChartDashboard = getSyncLifecycle(createDashboardGroup(covidPatientChartMeta), options);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -2,13 +2,7 @@ import { EncounterList, EncounterListColumn, getObsFromEncounter } from '@ohri/o
import React, { useMemo } from 'react';
import { useTranslation } from 'react-i18next';
import { moduleName } from '../index';
import {
covid_Assessment_EncounterUUID,
covidReasonsForTestingConcep_UUID,
covidOutcomeUUID,
covidEncounterDateTime_UUID,
covidSymptomsPresentation,
} from '../constants';
import { useConfig } from '@openmrs/esm-framework';
export const covidFormSlot = 'hts-encounter-form-slot';
export const covidEncounterRepresentation =
'custom:(uuid,encounterDatetime,location:(uuid,name),' +
Expand All @@ -21,14 +15,15 @@ interface CovidAssessmentWidgetProps {

const CovidAssessment: React.FC<CovidAssessmentWidgetProps> = ({ patientUuid }) => {
const { t } = useTranslation();
const config = useConfig();

const columns: EncounterListColumn[] = useMemo(
() => [
{
key: 'encounterDate',
header: t('assessmentDate', 'Date of Assessment'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidEncounterDateTime_UUID, true);
return getObsFromEncounter(encounter, config.obsConcepts.covidEncounterDateTime_UUID, true);
},
link: {
handleNavigate: (encounter) => {
Expand All @@ -40,21 +35,21 @@ const CovidAssessment: React.FC<CovidAssessmentWidgetProps> = ({ patientUuid })
key: 'reasonsForTesting',
header: t('reasonsForTesting', 'Reason for testing'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidReasonsForTestingConcep_UUID);
return getObsFromEncounter(encounter, config.obsConcepts.covidReasonsForTestingConcep_UUID);
},
},
{
key: 'symptomatic',
header: t('symptomatic', 'Presentation'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidSymptomsPresentation, false);
return getObsFromEncounter(encounter, config.obsConcepts.covidSymptomsPresentation, false);
},
},
{
key: 'outcome',
header: t('outcome', 'Outcome'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidOutcomeUUID);
return getObsFromEncounter(encounter, config.obsConcepts.covidOutcomeUUID);
},
},
{
Expand Down Expand Up @@ -107,7 +102,7 @@ const CovidAssessment: React.FC<CovidAssessmentWidgetProps> = ({ patientUuid })
return (
<EncounterList
patientUuid={patientUuid}
encounterType={covid_Assessment_EncounterUUID}
encounterType={config.encounterTypes.covid_Assessment_EncounterUUID}
formList={[
{ name: 'COVID Assessment Form', excludedIntents: ['COVID_LAB_ASSESSMENT_EMBED'] },
{ name: 'COVID Case Form' },
Expand Down
16 changes: 6 additions & 10 deletions packages/esm-covid-app/src/views/covid-outcomes.encounter-list.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -7,12 +7,7 @@ import {
import React, { useMemo } from 'react';
import { useTranslation } from 'react-i18next';
import { moduleName } from '../index';
import {
covid_Assessment_EncounterUUID,
covidTestTypeUUID,
covidSpecimentTestDate_UUID,
covidOutcomeUUID,
} from '../constants';
import { useConfig } from '@openmrs/esm-framework';

export const covidFormSlot = 'hts-encounter-form-slot';

Expand All @@ -22,6 +17,7 @@ interface CovidOutcomesWidgetProps {

const CovidOutcomes: React.FC<CovidOutcomesWidgetProps> = ({ patientUuid }) => {
const { t } = useTranslation();
const config = useConfig();

const columns: EncounterListColumn[] = useMemo(
() => [
Expand All @@ -41,21 +37,21 @@ const CovidOutcomes: React.FC<CovidOutcomesWidgetProps> = ({ patientUuid }) => {
key: 'testType',
header: t('testType', 'Test type'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidTestTypeUUID);
return getObsFromEncounter(encounter, config.obsConcepts.covidTestTypeUUID);
},
},
{
key: 'testDate',
header: t('testDate', 'Test date'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidSpecimentTestDate_UUID, true);
return getObsFromEncounter(encounter, config.obsConcepts.covidSpecimentTestDate_UUID, true);
},
},
{
key: 'outcome',
header: t('outcomeStatus', 'Outcome status'),
getValue: (encounter) => {
return getObsFromEncounter(encounter, covidOutcomeUUID);
return getObsFromEncounter(encounter, config.obsConcepts.covidOutcomeUUID);
},
},
{
Expand All @@ -72,7 +68,7 @@ const CovidOutcomes: React.FC<CovidOutcomesWidgetProps> = ({ patientUuid }) => {
return (
<EncounterList
patientUuid={patientUuid}
encounterType={covid_Assessment_EncounterUUID}
encounterType={config.encounterTypes.covid_Assessment_EncounterUUID}
formList={[{ name: 'COVID Case Form' }]}
columns={columns}
description={displayText}
Expand Down
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