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Fixes #2333.
Part of #2329
Fixes #2186.
Fixes #891
This PR includes PRs #2330 and #2332 and #2384 and should be merged after them (or instead of them).
In this PR I remove all-error-codes.md. These codes are already documented in netcdf.h.
@WardF you probably want to get these documentation fixes in before the 4.9.0 release.
(Also adding netcdf_filter.h to doxygen build.)