GRN multiprocessing and sparse matrix support #140
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- requires setting "--client_or_address multiprocessing"
- Added CLI option --sparse - Added option to loom load function that reads the expression matrix to sparse (CSC) format. In this case, a tuple of expresion matrix, gene and cell names is returned.
…of Dask" This reverts commit bce2816. - Arboreto multiprocessing will be used through the helper script instead of the cli
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Updates:
scripts/arboreto_with_multiprocessing.pythat runs the Arboreto GRN algorithms (GRNBoost2, GENIE3) without Dask for compatibility.