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@aidenlab

Aiden Lab

The Center for Genome Architecture

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  1. juicer juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Shell 469 191

  2. Juicebox Juicebox Public

    Visualization and analysis software for Hi-C data -

    Java 279 61

  3. 3d-dna 3d-dna Public

    3D de novo assembly (3D DNA) pipeline

    Shell 219 57

  4. straw straw Public

    Extract data quickly from Juicebox via straw

    C++ 69 35

  5. BEAR BEAR Public

    BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

    Shell 6 1

  6. EigenVector EigenVector Public

    Forked from moshe-olshansky/EigenVector

    R functions for very fast eigenvector calculation

    C 10 4

Repositories

Showing 10 of 36 repositories
  • hello3dmcp-server Public

    MCP server for controlling 3D model visualization via Model Context Protocol

    aidenlab/hello3dmcp-server’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 4, 2025
  • spacewalk Public
    aidenlab/spacewalk’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Dec 3, 2025
  • juicebox.js Public

    HiC contact matrix visualization

    aidenlab/juicebox.js’s past year of commit activity
    JavaScript 22 MIT 14 22 0 Updated Dec 2, 2025
  • hic-straw Public

    Command line and web utilities for reading .hic contact matrix files

    aidenlab/hic-straw’s past year of commit activity
    JavaScript 10 MIT 4 0 0 Updated Dec 1, 2025
  • hello3dmcp-frontend Public

    3D interactive model visualization built with Three.js, connects to MCP server via WebSocket

    aidenlab/hello3dmcp-frontend’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 1, 2025
  • Hello3DLLM Public

    Exploration of LLM Enabled Interactive Visual Apps

    aidenlab/Hello3DLLM’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 29, 2025
  • juicebox-web Public
    aidenlab/juicebox-web’s past year of commit activity
    JavaScript 3 1 3 0 Updated Nov 12, 2025
  • juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    aidenlab/juicer’s past year of commit activity
    Shell 469 MIT 191 102 8 Updated Aug 31, 2025
  • straw Public

    Extract data quickly from Juicebox via straw

    aidenlab/straw’s past year of commit activity
    C++ 69 MIT 35 32 1 Updated Apr 6, 2025
  • juicebox.js_AL Public Forked from aidenlab/juicebox.js

    HiC contact matrix visualization

    aidenlab/juicebox.js_AL’s past year of commit activity
    JavaScript 0 MIT 14 0 0 Updated Feb 15, 2025
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