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1. aidenlab/juicer aidenlab/juicer Public

   A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

   Shell 415 183

2. aidenlab/Juicebox aidenlab/Juicebox Public

   Visualization and analysis software for Hi-C data -

   Java 244 58

3. aidenlab/straw aidenlab/straw Public

   Extract data quickly from Juicebox via straw

   C++ 63 35

4. java-straw java-straw Public

   Java 2 4

5. clear-tools clear-tools Public

   Chromatin Landscape Exploration, Analysis, and Research Tools

   Java 2 2

6. smart smart Public

   Subcompartment Mapping, Analysis, and Revision Tools

   Java