FAQ

How can I access published Hi-C data?

You can use Juicebox and Juicer command line tools directly on URLs. Check out our data page for those links. We recommend this method as opposed to downloading full .hic files, but if there's an experiment you plan to explore a lot and/or you have a bad internet connection, you can download locally.

If you would like to download a local version of a .hic file, check out the GEO repository for the experiment. We have also put some maps up in a Box mirror

You can also parse the default properties file at http://hicfiles.tc4ga.com/juicebox.properties to grab the web address of the file you're interested in.

How do I create my own .hic files from my own data?

Check out the Juicer command line tools pre command

What's the format of the restriction site file?

See these directions

Error: the chromosome combination appears in multiple blocks

Please see this thread

My question wasn't answered here

Please search the 3D genomics forum and ask your question there