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Add CSV options to the CSV parser #28491

Merged
merged 73 commits into from
Aug 3, 2023
Merged

Add CSV options to the CSV parser #28491

merged 73 commits into from
Aug 3, 2023

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girarda
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@girarda girarda commented Jul 19, 2023

What

  • Handle the following CSV options that are supported by pyarrow
    • true_values: Define which string values convert to True
    • false_values: Define which string values convert to False
    • skip_rows (renamed to skip_rows_before_header): Number of rows to skip before header
    • skip_rows_after_names (renamed to skip_rows_after_header): Number of rows to skip after the header (the ticket says we can combine these two into a single config field, but pyarrow's skip_rows means "skip rows before header, not a global number of rows to skip)
    • newlines in values (only valid if the values are quoted). New lines in non-quoted strings will result in unparseable records
    • autogenerate_column_names
  • Added tests for
    • strings_can_be_null (always true)

These options are not handled. I bolded the ones that would cause breaking changes:

  • infer_datatypes. We'll need to write our own type detection. That can/should be done separately to make reviewing easier (this PR is already quite large)
  • compression: This will need to be implemented at the source level as part of the file reader
  • encoding: This will need to be implemented at the source level as part of the file reader
  • include_missing_columns: This field doesn't make sense since we're always supporting schema evolution. The fields will show up as null in the destination if they are not set
  • column_types: Users can pass an input schema if they want to decide on the schema
  • check_utf8: This should be part of the encoding (not sure we'll need to support this though)
  • decimal_point: Seems fairly low value to allow users to use any character as decimal point
  • quoted_strings_can_be_null: Always setting this to true seems like a reasonable default
  • include_columns: Users can use column selection to decide what to sync
  • auto_dict_encode: I don’t know what this means in a non-pyarrow world. There is no encoded dicts type. This will be a breaking change
  • auto_dict_max_cardinality: Same as above. There is no dict type since we're not converting to a pyarrow object
  • timestamp_parsers: We write the timestamps as strings instead of converting them into pyarrow timestamp objects

How

  • Add config fields to the CsvFormat object: null_values, skip_rows_before_header, skip_rows_after_header, autogenerate_column_names, true_values, false_values
  • Update the FileTypeParser.parse_records so it can return None if a row cannot be parsed
  • Update the CsvParser.parse_records so it returns None if a row cannot be parsed
  • Update CsvParser.parse_records to skip rows before and after the header if specified in the config
  • Update CsvParse to autogenerate the header if specified in the config
  • Update the cast_types method to convert bool and null values according to the config
  • Update DefaultFileBasedStream to handle None records. These records should never pass the validation. The skip policy return False while the others raise an Exception)

Recommended reading order

  1. airbyte-cdk/python/airbyte_cdk/sources/file_based/config/csv_format.py
  2. airbyte-cdk/python/airbyte_cdk/sources/file_based/file_types/file_type_parser.py
  3. airbyte-cdk/python/airbyte_cdk/sources/file_based/file_types/csv_parser.py
  4. airbyte-cdk/python/airbyte_cdk/sources/file_based/file_types/jsonl_parser.py
  5. airbyte-cdk/python/airbyte_cdk/sources/file_based/file_types/parquet_parser.py
  6. airbyte-cdk/python/airbyte_cdk/sources/file_based/schema_validation_policies/abstract_schema_validation_policy.py
  7. airbyte-cdk/python/airbyte_cdk/sources/file_based/schema_validation_policies/default_schema_validation_policies.py
  8. airbyte-cdk/python/airbyte_cdk/sources/file_based/stream/abstract_file_based_stream.py
  9. airbyte-cdk/python/airbyte_cdk/sources/file_based/stream/default_file_based_stream.py

@octavia-squidington-iii octavia-squidington-iii added area/connectors Connector related issues CDK Connector Development Kit connectors/source/s3 labels Jul 19, 2023
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@octavia-squidington-iii octavia-squidington-iii removed the area/connectors Connector related issues label Jul 19, 2023
@@ -922,7 +941,6 @@
"escape_char": "@",
"double_quote": True,
"newlines_in_values": False,
"quoting_behavior": "Quote All"
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removed this option from the test since it was not impacting the output

@girarda girarda force-pushed the alex/csv_options branch from f6b2d32 to 9e73b51 Compare July 25, 2023 22:32
Comment on lines 21 to 24
with pytest.raises(ValidationError):
CsvFormat(skip_rows_before_header=1, autogenerate_column_names=True)
else:
CsvFormat(skip_rows_before_header=1, autogenerate_column_names=True)
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Suggested change
with pytest.raises(ValidationError):
CsvFormat(skip_rows_before_header=1, autogenerate_column_names=True)
else:
CsvFormat(skip_rows_before_header=1, autogenerate_column_names=True)
with pytest.raises(ValidationError):
CsvFormat(skip_rows_before_header=skip_rows_before_header, autogenerate_column_names=autogenerate_column_names)
else:
CsvFormat(skip_rows_before_header=skip_rows_before_header, autogenerate_column_names=autogenerate_column_names)

@girarda girarda requested a review from clnoll August 2, 2023 16:26
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LGTM! For my personal knowledge, do we need to cast values within a dict or a list?

@@ -178,5 +221,17 @@ def cast_types(row: Dict[str, str], property_types: Dict[str, Any], logger: logg
return result


def _value_to_bool(value: str, true_values: List[str], false_values: List[str]) -> bool:
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Should those be sets instead of lists for performance purposes?

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yes, done

@@ -178,5 +221,17 @@ def cast_types(row: Dict[str, str], property_types: Dict[str, Any], logger: logg
return result


def _value_to_bool(value: str, true_values: List[str], false_values: List[str]) -> bool:
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Should this check be case-insensitive? Thinking about this, I feel it provides more flexibility if not but the UX might be annoying if I want to validate "true" as case insensitive (i.e. I'll need to provide "True", "TRUE", tRue", "tRUe", etc...)

The same question probably applies to null values

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I think they should be case-sensitve for backwards compatibility. We can add the option for case-insensitivity if needed.

Documented that the strings are case-sensitive in the spec


def cast_types(row: Dict[str, str], property_types: Dict[str, Any], logger: logging.Logger) -> Dict[str, Any]:

def cast_types(row: Dict[str, str], property_types: Dict[str, Any], config_format: CsvFormat, logger: logging.Logger) -> Dict[str, Any]:
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I know this was like this before but why is this public? It does not seem to be be used elsewhere

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fixed

if i < config_format.skip_rows_after_header:
continue
# The row was not properly parsed if any of the values are None
if any(val is None for val in row.values()):
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Do we have a test for this? It seems odd and I feel it would be worth documenting

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this is implicitly tested by test_read[csv_newline_in_values_not_quoted] and I added a unit test because I agree it's surprising

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girarda commented Aug 3, 2023

LGTM! For my personal knowledge, do we need to cast values within a dict or a list?

Excellent question!

I played around with pyarrow to and conversions of List[bool] and map[str, bool] aren't supported so legacy s3 converted these to strings.

pyarrow.lib.ArrowNotImplementedError: CSV conversion to list<item: bool> is not supported
pyarrow.lib.ArrowNotImplementedError: CSV conversion to list<item: bool> is not supported

In general, we shouldn't have to worry about casting nested values since destination v2 won't normalize the data

@girarda girarda merged commit 641a65a into master Aug 3, 2023
@girarda girarda deleted the alex/csv_options branch August 3, 2023 15:59
jbfbell pushed a commit that referenced this pull request Aug 5, 2023
* remove invalid legacy option

* remove unused option

* the tests pass but this is quite messy

* very slight clean up

* Add skip options to csv format

* fix some of the typing issues

* fixme comment

* remove extra log message

* fix typing issues

* skip before header

* skip after header

* format

* add another test

* Automated Commit - Formatting Changes

* auto generate column names

* delete dead code

* update title and description

* true and false values

* Update the tests

* Add comment

* missing test

* rename

* update expected spec

* move to method

* Update comment

* fix typo

* remove unused import

* Add a comment

* None records do not pass the WaitForDiscoverPolicy

* format

* remove second branch to ensure we always go through the same processing

* Raise an exception if the record is None

* reset

* Update tests

* handle unquoted newlines

* Automated Commit - Formatting Changes

* Update test case so the quoting is explicit

* Update comment

* Automated Commit - Formatting Changes

* Fail validation if skipping rows before header and header is autogenerated

* always fail if a record cannot be parsed

* format

* set write line_no in error message

* remove none check

* Automated Commit - Formatting Changes

* enable autogenerate test

* remove duplicate test

* missing unit tests

* Update

* remove branching

* remove unused none check

* Update tests

* remove branching

* format

* extract to function

* comment

* missing type

* type annotation

* use set

* Document that the strings are case-sensitive

* public -> private

* add unit test

* newline

---------

Co-authored-by: girarda <girarda@users.noreply.github.com>
jbfbell added a commit that referenced this pull request Aug 9, 2023
* Add everything for BQ but migrate, refactor interface after practical work

* Make new default methods, refactor to single implemented method

* MigrationInterface and BQ impl created

* Trying to integrate with standard inserts

* remove unnecessary NameAndNamespacePair class

* Shimmed in

* Java Docs

* Initial Testing Setup

* Tests!

* Move Migrator into TyperDeduper

* Functional Migration

* Add Integration Test

* Pr updates

* bump version

* bump version

* version bump

* Update to airbyte-ci-internal (#29026)

* 🐛 Source Github, Instagram, Zendesk-support, Zendesk-talk: fix CAT tests fail on `spec` (#28910)

* connectors-ci: better modified connectors detection logic (#28855)

* connectors-ci: report path should always start with `airbyte-ci/` (#29030)

* make report path always start with airbyte-ci

* revert report path in orchestrator

* add more test cases

* bump version

* Updated docs (#29019)

* CDK: Embedded reader utils (#28873)

* relax pydantic dep

* Automated Commit - Format and Process Resources Changes

* wip

* wrap up base integration

* add init file

* introduce CDK runner and improve error message

* make state param optional

* update protocol models

* review comments

* always run incremental if possible

* fix

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🚨🚨 Low code CDK: Decouple SimpleRetriever and HttpStream (#28657)

* fix tests

* format

* review comments

* Automated Commit - Formatting Changes

* review comments

* review comments

* review comments

* log all messages

* log all message

* review comments

* review comments

* Automated Commit - Formatting Changes

* add comment

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🐛 Source Github, Instagram, Zendesk Support / Talk - revert `spec` changes and improve (#29031)

* Source oauth0: new streams and fix incremental (#29001)

* Add new streams Organizations,OrganizationMembers,OrganizationMemberRoles

* relax schema definition to allow additional fields

* Bump image tag version

* revert some changes to the old schemas

* Format python so gradle can pass

* update incremental

* remove unused print

* fix unit test

---------

Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>

* 🐛 Source Mongo: Fix failing acceptance tests (#28816)

* Fix failing acceptance tests

* Fix failing strict acceptance tests

* Source-Greenhouse: Fix unit tests for new CDK version (#28969)

Fix unit tests

* Add CSV options to the CSV parser (#28491)

* remove invalid legacy option

* remove unused option

* the tests pass but this is quite messy

* very slight clean up

* Add skip options to csv format

* fix some of the typing issues

* fixme comment

* remove extra log message

* fix typing issues

* skip before header

* skip after header

* format

* add another test

* Automated Commit - Formatting Changes

* auto generate column names

* delete dead code

* update title and description

* true and false values

* Update the tests

* Add comment

* missing test

* rename

* update expected spec

* move to method

* Update comment

* fix typo

* remove unused import

* Add a comment

* None records do not pass the WaitForDiscoverPolicy

* format

* remove second branch to ensure we always go through the same processing

* Raise an exception if the record is None

* reset

* Update tests

* handle unquoted newlines

* Automated Commit - Formatting Changes

* Update test case so the quoting is explicit

* Update comment

* Automated Commit - Formatting Changes

* Fail validation if skipping rows before header and header is autogenerated

* always fail if a record cannot be parsed

* format

* set write line_no in error message

* remove none check

* Automated Commit - Formatting Changes

* enable autogenerate test

* remove duplicate test

* missing unit tests

* Update

* remove branching

* remove unused none check

* Update tests

* remove branching

* format

* extract to function

* comment

* missing type

* type annotation

* use set

* Document that the strings are case-sensitive

* public -> private

* add unit test

* newline

---------

Co-authored-by: girarda <girarda@users.noreply.github.com>

* Dagster: Add sentry logging (#28822)

* Add sentry

* add sentry decorator

* Add traces

* Use sentry trace

* Improve duplicate logging

* Add comments

* DNC

* Fix up issues

* Move to scopes

* Remove breadcrumb

* Update lock

* ✨Source Shortio: Migrate Python CDK to Low-code CDK (#28950)

* Migrate Shortio to Low-Code

* Update abnormal state

* Format

* Update Docs

* Fix metadata.yaml

* Add pagination

* Add incremental sync

* add incremental parameters

* update metadata

* rollback update version

* release date

---------

Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>

* Update to new verbiage (#29051)

* [skip ci] Metadata: Remove leading underscore (#29024)

* DNC

* Add test models

* Add model test

* Remove underscore from metadata files

* Regenerate models

* Add test to check for key transformation

* Allow additional fields on metadata

* Delete transform

* Proof of concept parallel source stream reading implementation for MySQL (#26580)

* Proof of concept parallel source stream reading implementation for MySQL

* Automated Change

* Add read method that supports concurrent execution to Source interface

* Remove parallel iterator

* Ensure that executor service is stopped

* Automated Commit - Format and Process Resources Changes

* Expose method to fix compilation issue

* Use concurrent map to avoid access issues

* Automated Commit - Format and Process Resources Changes

* Ensure concurrent streams finish before closing source

* Fix compile issue

* Formatting

* Exclude concurrent stream threads from orphan thread watcher

* Automated Commit - Format and Process Resources Changes

* Refactor orphaned thread logic to account for concurrent execution

* PR feedback

* Implement readStreams in wrapper source

* Automated Commit - Format and Process Resources Changes

* Add readStream override

* Automated Commit - Format and Process Resources Changes

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* Debug logging

* Reduce logging level

* Replace synchronized calls to System.out.println when concurrent

* Close consumer

* Flush before close

* Automated Commit - Format and Process Resources Changes

* Remove charset

* Use ASCII and flush periodically for parallel streams

* Test performance harness patch

* Automated Commit - Format and Process Resources Changes

* Cleanup

* Logging to identify concurrent read enabled

* Mark parameter as final

---------

Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>

* connectors-ci: disable dependency scanning (#29033)

* updates (#29059)

* Metadata: skip breaking change validation on prerelease (#29017)

* skip breaking change validation

* Move ValidatorOpts higher in call

* Add prerelease test

* Fix test

* ✨ Source MongoDB Internal POC: Generate Test Data (#29049)

* Add script to generate test data

* Fix prose

* Update credentials example

* PR feedback

* Bump Airbyte version from 0.50.12 to 0.50.13

* Bump versions for mssql strict-encrypt (#28964)

* Bump versions for mssql strict-encrypt

* Fix failing test

* Fix failing test

* 🎨 Improve replication method selection UX (#28882)

* update replication method in MySQL source

* bump version

* update expected specs

* update registries

* bump strict encrypt version

* make password always_show

* change url

* update registries

* 🐛 Avoid writing records to log (#29047)

* Avoid writing records to log

* Update version

* Rollout ctid cdc (#28708)

* source-postgres: enable ctid+cdc implementation

* 100% ctid rollout for cdc

* remove CtidFeatureFlags

* fix CdcPostgresSourceAcceptanceTest

* Bump versions and release notes

* Fix compilation error due to previous merge

---------

Co-authored-by: subodh <subodh1810@gmail.com>

* connectors-ci: fix `unhashable type 'set'` (#29064)

* Add Slack Alert lifecycle to Dagster for Metadata publish (#28759)

* DNC

* Add slack lifecycle logging

* Update to use slack

* Update slack to use resource and bot

* Improve markdown

* Improve log

* Add sensor logging

* Extend sensor time

* merge conflict

* PR Refactoring

* Make the tests work

* remove unnecessary classes, pr feedback

* more merging

* Update airbyte-integrations/bases/base-typing-deduping-test/src/main/java/io/airbyte/integrations/base/destination/typing_deduping/BaseSqlGeneratorIntegrationTest.java

Co-authored-by: Edward Gao <edward.gao@airbyte.io>

* snowflake updates

---------

Co-authored-by: Ben Church <ben@airbyte.io>
Co-authored-by: Baz <oleksandr.bazarnov@globallogic.com>
Co-authored-by: Augustin <augustin@airbyte.io>
Co-authored-by: Serhii Lazebnyi <53845333+lazebnyi@users.noreply.github.com>
Co-authored-by: Joe Reuter <joe@airbyte.io>
Co-authored-by: flash1293 <flash1293@users.noreply.github.com>
Co-authored-by: Marcos Marx <marcosmarxm@users.noreply.github.com>
Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>
Co-authored-by: Jonathan Pearlin <jonathan@airbyte.io>
Co-authored-by: Alexandre Girard <alexandre@airbyte.io>
Co-authored-by: girarda <girarda@users.noreply.github.com>
Co-authored-by: btkcodedev <btk.codedev@gmail.com>
Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>
Co-authored-by: Natalie Kwong <38087517+nataliekwong@users.noreply.github.com>
Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>
Co-authored-by: Alexandre Cuoci <Hesperide@users.noreply.github.com>
Co-authored-by: terencecho <terencecho@users.noreply.github.com>
Co-authored-by: Lake Mossman <lake@airbyte.io>
Co-authored-by: Benoit Moriceau <benoit@airbyte.io>
Co-authored-by: subodh <subodh1810@gmail.com>
Co-authored-by: Edward Gao <edward.gao@airbyte.io>
harrytou pushed a commit to KYVENetwork/airbyte that referenced this pull request Sep 1, 2023
* Add everything for BQ but migrate, refactor interface after practical work

* Make new default methods, refactor to single implemented method

* MigrationInterface and BQ impl created

* Trying to integrate with standard inserts

* remove unnecessary NameAndNamespacePair class

* Shimmed in

* Java Docs

* Initial Testing Setup

* Tests!

* Move Migrator into TyperDeduper

* Functional Migration

* Add Integration Test

* Pr updates

* bump version

* bump version

* version bump

* Update to airbyte-ci-internal (airbytehq#29026)

* 🐛 Source Github, Instagram, Zendesk-support, Zendesk-talk: fix CAT tests fail on `spec` (airbytehq#28910)

* connectors-ci: better modified connectors detection logic (airbytehq#28855)

* connectors-ci: report path should always start with `airbyte-ci/` (airbytehq#29030)

* make report path always start with airbyte-ci

* revert report path in orchestrator

* add more test cases

* bump version

* Updated docs (airbytehq#29019)

* CDK: Embedded reader utils (airbytehq#28873)

* relax pydantic dep

* Automated Commit - Format and Process Resources Changes

* wip

* wrap up base integration

* add init file

* introduce CDK runner and improve error message

* make state param optional

* update protocol models

* review comments

* always run incremental if possible

* fix

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🚨🚨 Low code CDK: Decouple SimpleRetriever and HttpStream (airbytehq#28657)

* fix tests

* format

* review comments

* Automated Commit - Formatting Changes

* review comments

* review comments

* review comments

* log all messages

* log all message

* review comments

* review comments

* Automated Commit - Formatting Changes

* add comment

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🐛 Source Github, Instagram, Zendesk Support / Talk - revert `spec` changes and improve (airbytehq#29031)

* Source oauth0: new streams and fix incremental (airbytehq#29001)

* Add new streams Organizations,OrganizationMembers,OrganizationMemberRoles

* relax schema definition to allow additional fields

* Bump image tag version

* revert some changes to the old schemas

* Format python so gradle can pass

* update incremental

* remove unused print

* fix unit test

---------

Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>

* 🐛 Source Mongo: Fix failing acceptance tests (airbytehq#28816)

* Fix failing acceptance tests

* Fix failing strict acceptance tests

* Source-Greenhouse: Fix unit tests for new CDK version (airbytehq#28969)

Fix unit tests

* Add CSV options to the CSV parser (airbytehq#28491)

* remove invalid legacy option

* remove unused option

* the tests pass but this is quite messy

* very slight clean up

* Add skip options to csv format

* fix some of the typing issues

* fixme comment

* remove extra log message

* fix typing issues

* skip before header

* skip after header

* format

* add another test

* Automated Commit - Formatting Changes

* auto generate column names

* delete dead code

* update title and description

* true and false values

* Update the tests

* Add comment

* missing test

* rename

* update expected spec

* move to method

* Update comment

* fix typo

* remove unused import

* Add a comment

* None records do not pass the WaitForDiscoverPolicy

* format

* remove second branch to ensure we always go through the same processing

* Raise an exception if the record is None

* reset

* Update tests

* handle unquoted newlines

* Automated Commit - Formatting Changes

* Update test case so the quoting is explicit

* Update comment

* Automated Commit - Formatting Changes

* Fail validation if skipping rows before header and header is autogenerated

* always fail if a record cannot be parsed

* format

* set write line_no in error message

* remove none check

* Automated Commit - Formatting Changes

* enable autogenerate test

* remove duplicate test

* missing unit tests

* Update

* remove branching

* remove unused none check

* Update tests

* remove branching

* format

* extract to function

* comment

* missing type

* type annotation

* use set

* Document that the strings are case-sensitive

* public -> private

* add unit test

* newline

---------

Co-authored-by: girarda <girarda@users.noreply.github.com>

* Dagster: Add sentry logging (airbytehq#28822)

* Add sentry

* add sentry decorator

* Add traces

* Use sentry trace

* Improve duplicate logging

* Add comments

* DNC

* Fix up issues

* Move to scopes

* Remove breadcrumb

* Update lock

* ✨Source Shortio: Migrate Python CDK to Low-code CDK (airbytehq#28950)

* Migrate Shortio to Low-Code

* Update abnormal state

* Format

* Update Docs

* Fix metadata.yaml

* Add pagination

* Add incremental sync

* add incremental parameters

* update metadata

* rollback update version

* release date

---------

Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>

* Update to new verbiage (airbytehq#29051)

* [skip ci] Metadata: Remove leading underscore (airbytehq#29024)

* DNC

* Add test models

* Add model test

* Remove underscore from metadata files

* Regenerate models

* Add test to check for key transformation

* Allow additional fields on metadata

* Delete transform

* Proof of concept parallel source stream reading implementation for MySQL (airbytehq#26580)

* Proof of concept parallel source stream reading implementation for MySQL

* Automated Change

* Add read method that supports concurrent execution to Source interface

* Remove parallel iterator

* Ensure that executor service is stopped

* Automated Commit - Format and Process Resources Changes

* Expose method to fix compilation issue

* Use concurrent map to avoid access issues

* Automated Commit - Format and Process Resources Changes

* Ensure concurrent streams finish before closing source

* Fix compile issue

* Formatting

* Exclude concurrent stream threads from orphan thread watcher

* Automated Commit - Format and Process Resources Changes

* Refactor orphaned thread logic to account for concurrent execution

* PR feedback

* Implement readStreams in wrapper source

* Automated Commit - Format and Process Resources Changes

* Add readStream override

* Automated Commit - Format and Process Resources Changes

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* Debug logging

* Reduce logging level

* Replace synchronized calls to System.out.println when concurrent

* Close consumer

* Flush before close

* Automated Commit - Format and Process Resources Changes

* Remove charset

* Use ASCII and flush periodically for parallel streams

* Test performance harness patch

* Automated Commit - Format and Process Resources Changes

* Cleanup

* Logging to identify concurrent read enabled

* Mark parameter as final

---------

Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>

* connectors-ci: disable dependency scanning (airbytehq#29033)

* updates (airbytehq#29059)

* Metadata: skip breaking change validation on prerelease (airbytehq#29017)

* skip breaking change validation

* Move ValidatorOpts higher in call

* Add prerelease test

* Fix test

* ✨ Source MongoDB Internal POC: Generate Test Data (airbytehq#29049)

* Add script to generate test data

* Fix prose

* Update credentials example

* PR feedback

* Bump Airbyte version from 0.50.12 to 0.50.13

* Bump versions for mssql strict-encrypt (airbytehq#28964)

* Bump versions for mssql strict-encrypt

* Fix failing test

* Fix failing test

* 🎨 Improve replication method selection UX (airbytehq#28882)

* update replication method in MySQL source

* bump version

* update expected specs

* update registries

* bump strict encrypt version

* make password always_show

* change url

* update registries

* 🐛 Avoid writing records to log (airbytehq#29047)

* Avoid writing records to log

* Update version

* Rollout ctid cdc (airbytehq#28708)

* source-postgres: enable ctid+cdc implementation

* 100% ctid rollout for cdc

* remove CtidFeatureFlags

* fix CdcPostgresSourceAcceptanceTest

* Bump versions and release notes

* Fix compilation error due to previous merge

---------

Co-authored-by: subodh <subodh1810@gmail.com>

* connectors-ci: fix `unhashable type 'set'` (airbytehq#29064)

* Add Slack Alert lifecycle to Dagster for Metadata publish (airbytehq#28759)

* DNC

* Add slack lifecycle logging

* Update to use slack

* Update slack to use resource and bot

* Improve markdown

* Improve log

* Add sensor logging

* Extend sensor time

* merge conflict

* PR Refactoring

* Make the tests work

* remove unnecessary classes, pr feedback

* more merging

* Update airbyte-integrations/bases/base-typing-deduping-test/src/main/java/io/airbyte/integrations/base/destination/typing_deduping/BaseSqlGeneratorIntegrationTest.java

Co-authored-by: Edward Gao <edward.gao@airbyte.io>

* snowflake updates

---------

Co-authored-by: Ben Church <ben@airbyte.io>
Co-authored-by: Baz <oleksandr.bazarnov@globallogic.com>
Co-authored-by: Augustin <augustin@airbyte.io>
Co-authored-by: Serhii Lazebnyi <53845333+lazebnyi@users.noreply.github.com>
Co-authored-by: Joe Reuter <joe@airbyte.io>
Co-authored-by: flash1293 <flash1293@users.noreply.github.com>
Co-authored-by: Marcos Marx <marcosmarxm@users.noreply.github.com>
Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>
Co-authored-by: Jonathan Pearlin <jonathan@airbyte.io>
Co-authored-by: Alexandre Girard <alexandre@airbyte.io>
Co-authored-by: girarda <girarda@users.noreply.github.com>
Co-authored-by: btkcodedev <btk.codedev@gmail.com>
Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>
Co-authored-by: Natalie Kwong <38087517+nataliekwong@users.noreply.github.com>
Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>
Co-authored-by: Alexandre Cuoci <Hesperide@users.noreply.github.com>
Co-authored-by: terencecho <terencecho@users.noreply.github.com>
Co-authored-by: Lake Mossman <lake@airbyte.io>
Co-authored-by: Benoit Moriceau <benoit@airbyte.io>
Co-authored-by: subodh <subodh1810@gmail.com>
Co-authored-by: Edward Gao <edward.gao@airbyte.io>
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