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CDK: Embedded reader utils #28873

Merged
merged 16 commits into from
Aug 3, 2023
Merged

CDK: Embedded reader utils #28873

merged 16 commits into from
Aug 3, 2023

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flash1293
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@flash1293 flash1293 commented Jul 31, 2023

Based on #28854

Related to #28016

This PR adds basic helpers to build embedded loaders in other python programs so they can leverage existing python sources.

The main part of this PR is adding the BaseEmbeddedIntegration class that wraps a source into a more generic interface that can easily be adapted for langchain and llama index loaders. Once it's merged, it can be used to make run-llama/llama-hub#428 ready for review.

Feature set:

  • Load all records from any stream, just by specifying the config and the stream name
  • Incrementally load new records by passing in an optional state (you can get that state from the last_state member)
  • Easily wrap CDK-based sources (implements AbstractSource at the top level)

This PR is kept slim on purpose to be able to ship some loaders quickly.

Things that can be implemented in follow-up PRs:

  • Add convenience functionality like checking whether the config matches the spec or not (and fail with a good error message in this case)
  • Allow to wrap docker-based connectors by providing a second runner

@octavia-squidington-iii octavia-squidington-iii added the CDK Connector Development Kit label Jul 31, 2023
@flash1293 flash1293 changed the base branch from master to flash1293/update-pydantic August 1, 2023 09:33


class CDKRunner(SourceRunner[TConfig]):
def __init__(self, source: AbstractSource, name: str):
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why does this have to be an AbstractSource / why not accept any Source?

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It can be any source, fixed this



def get_defined_id(stream: AirbyteStream, data: Dict[str, Any]) -> Optional[str]:
import dpath
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why is dpath imported from the method instead of at the top of the file?

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Fixed

Base automatically changed from flash1293/update-pydantic to master August 2, 2023 11:03
@flash1293 flash1293 marked this pull request as ready for review August 2, 2023 13:02
@flash1293 flash1293 requested a review from a team as a code owner August 2, 2023 13:02
output = self._handle_record(message.record, get_defined_id(stream, message.record.data))
if output:
yield output
elif message.type is Type.STATE and message.state:
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Not sure if it matters for embedded, but we generally need to output state messages to destination so they can checkpoint

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As it's just in-memory I think it's OK - if they want the guarantees from checkpointing, they can use hosted Airbyte (not trying to re-build the whole platform here :) )

"""
pass

def _load_data(self, stream_name: str, state: Optional[AirbyteStateMessage] = None) -> Iterable[TOutput]:
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This method probably shouldn't be private since it's used by child classes

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I understood the underscore as meaning protected, not private (https://jellis18.github.io/post/2022-01-15-access-modifiers-python/#:~:text=Private%20vs%20Protected,and%20not%20a%20private%20value.) - ChatGPT agrees with me as well ;) I'm going to leave it like this for now as you shouldn't call it on the integration from the outside.

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interesting. I guess we don't have many private fields in our codebase 🤷

@flash1293 flash1293 merged commit 1ee4c04 into master Aug 3, 2023
@flash1293 flash1293 deleted the flash1293/embedded-reader branch August 3, 2023 10:02
jbfbell pushed a commit that referenced this pull request Aug 5, 2023
* relax pydantic dep

* Automated Commit - Format and Process Resources Changes

* wip

* wrap up base integration

* add init file

* introduce CDK runner and improve error message

* make state param optional

* update protocol models

* review comments

* always run incremental if possible

* fix

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>
jbfbell added a commit that referenced this pull request Aug 9, 2023
* Add everything for BQ but migrate, refactor interface after practical work

* Make new default methods, refactor to single implemented method

* MigrationInterface and BQ impl created

* Trying to integrate with standard inserts

* remove unnecessary NameAndNamespacePair class

* Shimmed in

* Java Docs

* Initial Testing Setup

* Tests!

* Move Migrator into TyperDeduper

* Functional Migration

* Add Integration Test

* Pr updates

* bump version

* bump version

* version bump

* Update to airbyte-ci-internal (#29026)

* 🐛 Source Github, Instagram, Zendesk-support, Zendesk-talk: fix CAT tests fail on `spec` (#28910)

* connectors-ci: better modified connectors detection logic (#28855)

* connectors-ci: report path should always start with `airbyte-ci/` (#29030)

* make report path always start with airbyte-ci

* revert report path in orchestrator

* add more test cases

* bump version

* Updated docs (#29019)

* CDK: Embedded reader utils (#28873)

* relax pydantic dep

* Automated Commit - Format and Process Resources Changes

* wip

* wrap up base integration

* add init file

* introduce CDK runner and improve error message

* make state param optional

* update protocol models

* review comments

* always run incremental if possible

* fix

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🚨🚨 Low code CDK: Decouple SimpleRetriever and HttpStream (#28657)

* fix tests

* format

* review comments

* Automated Commit - Formatting Changes

* review comments

* review comments

* review comments

* log all messages

* log all message

* review comments

* review comments

* Automated Commit - Formatting Changes

* add comment

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🐛 Source Github, Instagram, Zendesk Support / Talk - revert `spec` changes and improve (#29031)

* Source oauth0: new streams and fix incremental (#29001)

* Add new streams Organizations,OrganizationMembers,OrganizationMemberRoles

* relax schema definition to allow additional fields

* Bump image tag version

* revert some changes to the old schemas

* Format python so gradle can pass

* update incremental

* remove unused print

* fix unit test

---------

Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>

* 🐛 Source Mongo: Fix failing acceptance tests (#28816)

* Fix failing acceptance tests

* Fix failing strict acceptance tests

* Source-Greenhouse: Fix unit tests for new CDK version (#28969)

Fix unit tests

* Add CSV options to the CSV parser (#28491)

* remove invalid legacy option

* remove unused option

* the tests pass but this is quite messy

* very slight clean up

* Add skip options to csv format

* fix some of the typing issues

* fixme comment

* remove extra log message

* fix typing issues

* skip before header

* skip after header

* format

* add another test

* Automated Commit - Formatting Changes

* auto generate column names

* delete dead code

* update title and description

* true and false values

* Update the tests

* Add comment

* missing test

* rename

* update expected spec

* move to method

* Update comment

* fix typo

* remove unused import

* Add a comment

* None records do not pass the WaitForDiscoverPolicy

* format

* remove second branch to ensure we always go through the same processing

* Raise an exception if the record is None

* reset

* Update tests

* handle unquoted newlines

* Automated Commit - Formatting Changes

* Update test case so the quoting is explicit

* Update comment

* Automated Commit - Formatting Changes

* Fail validation if skipping rows before header and header is autogenerated

* always fail if a record cannot be parsed

* format

* set write line_no in error message

* remove none check

* Automated Commit - Formatting Changes

* enable autogenerate test

* remove duplicate test

* missing unit tests

* Update

* remove branching

* remove unused none check

* Update tests

* remove branching

* format

* extract to function

* comment

* missing type

* type annotation

* use set

* Document that the strings are case-sensitive

* public -> private

* add unit test

* newline

---------

Co-authored-by: girarda <girarda@users.noreply.github.com>

* Dagster: Add sentry logging (#28822)

* Add sentry

* add sentry decorator

* Add traces

* Use sentry trace

* Improve duplicate logging

* Add comments

* DNC

* Fix up issues

* Move to scopes

* Remove breadcrumb

* Update lock

* ✨Source Shortio: Migrate Python CDK to Low-code CDK (#28950)

* Migrate Shortio to Low-Code

* Update abnormal state

* Format

* Update Docs

* Fix metadata.yaml

* Add pagination

* Add incremental sync

* add incremental parameters

* update metadata

* rollback update version

* release date

---------

Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>

* Update to new verbiage (#29051)

* [skip ci] Metadata: Remove leading underscore (#29024)

* DNC

* Add test models

* Add model test

* Remove underscore from metadata files

* Regenerate models

* Add test to check for key transformation

* Allow additional fields on metadata

* Delete transform

* Proof of concept parallel source stream reading implementation for MySQL (#26580)

* Proof of concept parallel source stream reading implementation for MySQL

* Automated Change

* Add read method that supports concurrent execution to Source interface

* Remove parallel iterator

* Ensure that executor service is stopped

* Automated Commit - Format and Process Resources Changes

* Expose method to fix compilation issue

* Use concurrent map to avoid access issues

* Automated Commit - Format and Process Resources Changes

* Ensure concurrent streams finish before closing source

* Fix compile issue

* Formatting

* Exclude concurrent stream threads from orphan thread watcher

* Automated Commit - Format and Process Resources Changes

* Refactor orphaned thread logic to account for concurrent execution

* PR feedback

* Implement readStreams in wrapper source

* Automated Commit - Format and Process Resources Changes

* Add readStream override

* Automated Commit - Format and Process Resources Changes

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* Debug logging

* Reduce logging level

* Replace synchronized calls to System.out.println when concurrent

* Close consumer

* Flush before close

* Automated Commit - Format and Process Resources Changes

* Remove charset

* Use ASCII and flush periodically for parallel streams

* Test performance harness patch

* Automated Commit - Format and Process Resources Changes

* Cleanup

* Logging to identify concurrent read enabled

* Mark parameter as final

---------

Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>

* connectors-ci: disable dependency scanning (#29033)

* updates (#29059)

* Metadata: skip breaking change validation on prerelease (#29017)

* skip breaking change validation

* Move ValidatorOpts higher in call

* Add prerelease test

* Fix test

* ✨ Source MongoDB Internal POC: Generate Test Data (#29049)

* Add script to generate test data

* Fix prose

* Update credentials example

* PR feedback

* Bump Airbyte version from 0.50.12 to 0.50.13

* Bump versions for mssql strict-encrypt (#28964)

* Bump versions for mssql strict-encrypt

* Fix failing test

* Fix failing test

* 🎨 Improve replication method selection UX (#28882)

* update replication method in MySQL source

* bump version

* update expected specs

* update registries

* bump strict encrypt version

* make password always_show

* change url

* update registries

* 🐛 Avoid writing records to log (#29047)

* Avoid writing records to log

* Update version

* Rollout ctid cdc (#28708)

* source-postgres: enable ctid+cdc implementation

* 100% ctid rollout for cdc

* remove CtidFeatureFlags

* fix CdcPostgresSourceAcceptanceTest

* Bump versions and release notes

* Fix compilation error due to previous merge

---------

Co-authored-by: subodh <subodh1810@gmail.com>

* connectors-ci: fix `unhashable type 'set'` (#29064)

* Add Slack Alert lifecycle to Dagster for Metadata publish (#28759)

* DNC

* Add slack lifecycle logging

* Update to use slack

* Update slack to use resource and bot

* Improve markdown

* Improve log

* Add sensor logging

* Extend sensor time

* merge conflict

* PR Refactoring

* Make the tests work

* remove unnecessary classes, pr feedback

* more merging

* Update airbyte-integrations/bases/base-typing-deduping-test/src/main/java/io/airbyte/integrations/base/destination/typing_deduping/BaseSqlGeneratorIntegrationTest.java

Co-authored-by: Edward Gao <edward.gao@airbyte.io>

* snowflake updates

---------

Co-authored-by: Ben Church <ben@airbyte.io>
Co-authored-by: Baz <oleksandr.bazarnov@globallogic.com>
Co-authored-by: Augustin <augustin@airbyte.io>
Co-authored-by: Serhii Lazebnyi <53845333+lazebnyi@users.noreply.github.com>
Co-authored-by: Joe Reuter <joe@airbyte.io>
Co-authored-by: flash1293 <flash1293@users.noreply.github.com>
Co-authored-by: Marcos Marx <marcosmarxm@users.noreply.github.com>
Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>
Co-authored-by: Jonathan Pearlin <jonathan@airbyte.io>
Co-authored-by: Alexandre Girard <alexandre@airbyte.io>
Co-authored-by: girarda <girarda@users.noreply.github.com>
Co-authored-by: btkcodedev <btk.codedev@gmail.com>
Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>
Co-authored-by: Natalie Kwong <38087517+nataliekwong@users.noreply.github.com>
Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>
Co-authored-by: Alexandre Cuoci <Hesperide@users.noreply.github.com>
Co-authored-by: terencecho <terencecho@users.noreply.github.com>
Co-authored-by: Lake Mossman <lake@airbyte.io>
Co-authored-by: Benoit Moriceau <benoit@airbyte.io>
Co-authored-by: subodh <subodh1810@gmail.com>
Co-authored-by: Edward Gao <edward.gao@airbyte.io>
harrytou pushed a commit to KYVENetwork/airbyte that referenced this pull request Sep 1, 2023
* Add everything for BQ but migrate, refactor interface after practical work

* Make new default methods, refactor to single implemented method

* MigrationInterface and BQ impl created

* Trying to integrate with standard inserts

* remove unnecessary NameAndNamespacePair class

* Shimmed in

* Java Docs

* Initial Testing Setup

* Tests!

* Move Migrator into TyperDeduper

* Functional Migration

* Add Integration Test

* Pr updates

* bump version

* bump version

* version bump

* Update to airbyte-ci-internal (airbytehq#29026)

* 🐛 Source Github, Instagram, Zendesk-support, Zendesk-talk: fix CAT tests fail on `spec` (airbytehq#28910)

* connectors-ci: better modified connectors detection logic (airbytehq#28855)

* connectors-ci: report path should always start with `airbyte-ci/` (airbytehq#29030)

* make report path always start with airbyte-ci

* revert report path in orchestrator

* add more test cases

* bump version

* Updated docs (airbytehq#29019)

* CDK: Embedded reader utils (airbytehq#28873)

* relax pydantic dep

* Automated Commit - Format and Process Resources Changes

* wip

* wrap up base integration

* add init file

* introduce CDK runner and improve error message

* make state param optional

* update protocol models

* review comments

* always run incremental if possible

* fix

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🚨🚨 Low code CDK: Decouple SimpleRetriever and HttpStream (airbytehq#28657)

* fix tests

* format

* review comments

* Automated Commit - Formatting Changes

* review comments

* review comments

* review comments

* log all messages

* log all message

* review comments

* review comments

* Automated Commit - Formatting Changes

* add comment

---------

Co-authored-by: flash1293 <flash1293@users.noreply.github.com>

* 🤖 Bump minor version of Airbyte CDK

* 🐛 Source Github, Instagram, Zendesk Support / Talk - revert `spec` changes and improve (airbytehq#29031)

* Source oauth0: new streams and fix incremental (airbytehq#29001)

* Add new streams Organizations,OrganizationMembers,OrganizationMemberRoles

* relax schema definition to allow additional fields

* Bump image tag version

* revert some changes to the old schemas

* Format python so gradle can pass

* update incremental

* remove unused print

* fix unit test

---------

Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>

* 🐛 Source Mongo: Fix failing acceptance tests (airbytehq#28816)

* Fix failing acceptance tests

* Fix failing strict acceptance tests

* Source-Greenhouse: Fix unit tests for new CDK version (airbytehq#28969)

Fix unit tests

* Add CSV options to the CSV parser (airbytehq#28491)

* remove invalid legacy option

* remove unused option

* the tests pass but this is quite messy

* very slight clean up

* Add skip options to csv format

* fix some of the typing issues

* fixme comment

* remove extra log message

* fix typing issues

* skip before header

* skip after header

* format

* add another test

* Automated Commit - Formatting Changes

* auto generate column names

* delete dead code

* update title and description

* true and false values

* Update the tests

* Add comment

* missing test

* rename

* update expected spec

* move to method

* Update comment

* fix typo

* remove unused import

* Add a comment

* None records do not pass the WaitForDiscoverPolicy

* format

* remove second branch to ensure we always go through the same processing

* Raise an exception if the record is None

* reset

* Update tests

* handle unquoted newlines

* Automated Commit - Formatting Changes

* Update test case so the quoting is explicit

* Update comment

* Automated Commit - Formatting Changes

* Fail validation if skipping rows before header and header is autogenerated

* always fail if a record cannot be parsed

* format

* set write line_no in error message

* remove none check

* Automated Commit - Formatting Changes

* enable autogenerate test

* remove duplicate test

* missing unit tests

* Update

* remove branching

* remove unused none check

* Update tests

* remove branching

* format

* extract to function

* comment

* missing type

* type annotation

* use set

* Document that the strings are case-sensitive

* public -> private

* add unit test

* newline

---------

Co-authored-by: girarda <girarda@users.noreply.github.com>

* Dagster: Add sentry logging (airbytehq#28822)

* Add sentry

* add sentry decorator

* Add traces

* Use sentry trace

* Improve duplicate logging

* Add comments

* DNC

* Fix up issues

* Move to scopes

* Remove breadcrumb

* Update lock

* ✨Source Shortio: Migrate Python CDK to Low-code CDK (airbytehq#28950)

* Migrate Shortio to Low-Code

* Update abnormal state

* Format

* Update Docs

* Fix metadata.yaml

* Add pagination

* Add incremental sync

* add incremental parameters

* update metadata

* rollback update version

* release date

---------

Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>

* Update to new verbiage (airbytehq#29051)

* [skip ci] Metadata: Remove leading underscore (airbytehq#29024)

* DNC

* Add test models

* Add model test

* Remove underscore from metadata files

* Regenerate models

* Add test to check for key transformation

* Allow additional fields on metadata

* Delete transform

* Proof of concept parallel source stream reading implementation for MySQL (airbytehq#26580)

* Proof of concept parallel source stream reading implementation for MySQL

* Automated Change

* Add read method that supports concurrent execution to Source interface

* Remove parallel iterator

* Ensure that executor service is stopped

* Automated Commit - Format and Process Resources Changes

* Expose method to fix compilation issue

* Use concurrent map to avoid access issues

* Automated Commit - Format and Process Resources Changes

* Ensure concurrent streams finish before closing source

* Fix compile issue

* Formatting

* Exclude concurrent stream threads from orphan thread watcher

* Automated Commit - Format and Process Resources Changes

* Refactor orphaned thread logic to account for concurrent execution

* PR feedback

* Implement readStreams in wrapper source

* Automated Commit - Format and Process Resources Changes

* Add readStream override

* Automated Commit - Format and Process Resources Changes

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* 🤖 Auto format source-mysql code [skip ci]

* Debug logging

* Reduce logging level

* Replace synchronized calls to System.out.println when concurrent

* Close consumer

* Flush before close

* Automated Commit - Format and Process Resources Changes

* Remove charset

* Use ASCII and flush periodically for parallel streams

* Test performance harness patch

* Automated Commit - Format and Process Resources Changes

* Cleanup

* Logging to identify concurrent read enabled

* Mark parameter as final

---------

Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>

* connectors-ci: disable dependency scanning (airbytehq#29033)

* updates (airbytehq#29059)

* Metadata: skip breaking change validation on prerelease (airbytehq#29017)

* skip breaking change validation

* Move ValidatorOpts higher in call

* Add prerelease test

* Fix test

* ✨ Source MongoDB Internal POC: Generate Test Data (airbytehq#29049)

* Add script to generate test data

* Fix prose

* Update credentials example

* PR feedback

* Bump Airbyte version from 0.50.12 to 0.50.13

* Bump versions for mssql strict-encrypt (airbytehq#28964)

* Bump versions for mssql strict-encrypt

* Fix failing test

* Fix failing test

* 🎨 Improve replication method selection UX (airbytehq#28882)

* update replication method in MySQL source

* bump version

* update expected specs

* update registries

* bump strict encrypt version

* make password always_show

* change url

* update registries

* 🐛 Avoid writing records to log (airbytehq#29047)

* Avoid writing records to log

* Update version

* Rollout ctid cdc (airbytehq#28708)

* source-postgres: enable ctid+cdc implementation

* 100% ctid rollout for cdc

* remove CtidFeatureFlags

* fix CdcPostgresSourceAcceptanceTest

* Bump versions and release notes

* Fix compilation error due to previous merge

---------

Co-authored-by: subodh <subodh1810@gmail.com>

* connectors-ci: fix `unhashable type 'set'` (airbytehq#29064)

* Add Slack Alert lifecycle to Dagster for Metadata publish (airbytehq#28759)

* DNC

* Add slack lifecycle logging

* Update to use slack

* Update slack to use resource and bot

* Improve markdown

* Improve log

* Add sensor logging

* Extend sensor time

* merge conflict

* PR Refactoring

* Make the tests work

* remove unnecessary classes, pr feedback

* more merging

* Update airbyte-integrations/bases/base-typing-deduping-test/src/main/java/io/airbyte/integrations/base/destination/typing_deduping/BaseSqlGeneratorIntegrationTest.java

Co-authored-by: Edward Gao <edward.gao@airbyte.io>

* snowflake updates

---------

Co-authored-by: Ben Church <ben@airbyte.io>
Co-authored-by: Baz <oleksandr.bazarnov@globallogic.com>
Co-authored-by: Augustin <augustin@airbyte.io>
Co-authored-by: Serhii Lazebnyi <53845333+lazebnyi@users.noreply.github.com>
Co-authored-by: Joe Reuter <joe@airbyte.io>
Co-authored-by: flash1293 <flash1293@users.noreply.github.com>
Co-authored-by: Marcos Marx <marcosmarxm@users.noreply.github.com>
Co-authored-by: Vasilis Gavriilidis <vasilis.gavriilidis@orfium.com>
Co-authored-by: Jonathan Pearlin <jonathan@airbyte.io>
Co-authored-by: Alexandre Girard <alexandre@airbyte.io>
Co-authored-by: girarda <girarda@users.noreply.github.com>
Co-authored-by: btkcodedev <btk.codedev@gmail.com>
Co-authored-by: marcosmarxm <marcosmarxm@gmail.com>
Co-authored-by: Natalie Kwong <38087517+nataliekwong@users.noreply.github.com>
Co-authored-by: jdpgrailsdev <jdpgrailsdev@users.noreply.github.com>
Co-authored-by: octavia-squidington-iii <octavia-squidington-iii@users.noreply.github.com>
Co-authored-by: Rodi Reich Zilberman <867491+rodireich@users.noreply.github.com>
Co-authored-by: rodireich <rodireich@users.noreply.github.com>
Co-authored-by: Alexandre Cuoci <Hesperide@users.noreply.github.com>
Co-authored-by: terencecho <terencecho@users.noreply.github.com>
Co-authored-by: Lake Mossman <lake@airbyte.io>
Co-authored-by: Benoit Moriceau <benoit@airbyte.io>
Co-authored-by: subodh <subodh1810@gmail.com>
Co-authored-by: Edward Gao <edward.gao@airbyte.io>
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